Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01997 ATGGAGCTGCAAAGACGACCAGATCAGTGCCTTCCGGAGAGGAAAGGGCAGAAGAGGAAGCTCGAGGAGGAATTCGAAGAGGACCGACAGATCTCCGCGCCTCCCACCGGCGACGCTCGCGACGCCCTCCTCTCCGACGTTCAGGAGCAGGTTTCCGTCCTCGATTCAACTTTCTCCTGGAAGGAATCAGACCGCGCTGCCGCCAAGCGCGCCACGCACGCCCTCGCCGATCTCGCCAAAAACGAGGAAGTTGTGAACGTGATTGTTGAAGGTGGCGCCATTCCGGCTTTGGTTAAGCATCTTCAAGCGCCTCCTCTCTCCGAAACCGACCGCGTCCAGAGGCCATTGCCGTTTGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCGCTTGGACTTCTTGCCGTTAAGCCAGAGCATCAACAACTCATTGTTGAGAGTGGTGCCTTAAAATATCTTGTTGATCTTTTGAAGAGGCATAAGAATGGGTTAACATCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGACGCTATCACTAATCTTGCTCATGAGAACAGCAGCATTAAGACTCGTGTCAGGATGGAAGGTGGGATTCCACCGCTTGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCCGGTGCGTTGCGAACCCTTGCCTTTAAAAATGATGAAAATAAAAATCAGATCGTTGAATGCAATGCCCTGCCAACTCTGATTCTAATGCTTCGATCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCATGCCGGAGCCTTGCAACCTGTTATTGGATTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTAATAGAGATGCTTCAGTCCTCTGATGTTCAGTTAAAAGAAATGTCTGCTTTTGCTTTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATAGCACACAATGGTGGCTTGATGCCATTACTAAAGCTTCTTGACTCGAAAAATGGATCTTTACAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGCCCGATTTTATTAGGGTCGGTGGAATTCAAAAACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAAACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGAGTTCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGCTTTTCAAAGGCGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTTCAGATGATCAGCGAAAAATATTTATTGATCACCATGGTTTGGAGTTGCTTATGGGGCTTCTTGGCTCTTATAACCCTAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCTATGACTCAGTCTCCTGTAGATGCTGCACCCCCATCTCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCCGACGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATCTGCCTGCTTGCATCTTCAGACGCATTTCGTGCAATGTTTGATGGTGGTTATCGGGAGAAGGAGGCACGGGATATAGAAATTCCAAACATAAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATACACTGGATCAGTTGATGTCACTCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACGATTGCACAGGATATATCACTGGAGAATGTGTCATGTATGTATGAACTTTCAGAAGCCTTTAATGCTACATCGTTGAGGCACACATGCATCCTTTTTATCTTGGAGCACTATGATAAATTGAGTGGAAAGCCAGGACACTCTCATCTGATACAGCGTATAATACCCGAGATCCAGAATTACTTTGTTAAAGCTCTTACAAAGGCCAATTCCAACCTCCAGCTATAG 2121 0.4559 MELQRRPDQCLPERKGQKRKLEEEFEEDRQISAPPTGDARDALLSDVQEQVSVLDSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLSETDRVQRPLPFEHEVEKGSAFALGLLAVKPEHQQLIVESGALKYLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLHAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVPDFIRVGGIQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSSDDQRKIFIDHHGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTQSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSCMYELSEAFNATSLRHTCILFILEHYDKLSGKPGHSHLIQRIIPEIQNYFVKALTKANSNLQL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01997 706 CDD BTB_POZ_ARIA_plant 527 642 - -
Cca06g01997 706 Gene3D - 419 518 IPR011989 -
Cca06g01997 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Cca06g01997 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 702 IPR044282 -
Cca06g01997 706 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Cca06g01997 706 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Cca06g01997 706 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Cca06g01997 706 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Cca06g01997 706 Gene3D Potassium Channel Kv1.1; Chain A 519 669 IPR011333 -
Cca06g01997 706 Gene3D - 268 418 IPR011989 -
Cca06g01997 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Cca06g01997 706 SUPERFAMILY POZ domain 532 634 IPR011333 -
Cca06g01997 706 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Cca06g01997 706 SUPERFAMILY ARM repeat 438 611 IPR016024 -
Cca06g01997 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 702 - -
Cca06g01997 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Cca06g01997 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 148 IPR000225 GO:0005515
Cca06g01997 706 Gene3D - 38 167 IPR011989 -
Cca06g01997 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Cca06g01997 706 MobiDBLite consensus disorder prediction 1 39 - -
Cca06g01997 706 SUPERFAMILY ARM repeat 62 412 IPR016024 -
Cca06g01997 706 MobiDBLite consensus disorder prediction 1 34 - -
Cca06g01997 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Cca06g01997 706 SMART arm_5 353 393 IPR000225 GO:0005515
Cca06g01997 706 SMART arm_5 81 135 IPR000225 GO:0005515
Cca06g01997 706 SMART arm_5 468 508 IPR000225 GO:0005515
Cca06g01997 706 SMART arm_5 228 268 IPR000225 GO:0005515
Cca06g01997 706 SMART arm_5 270 310 IPR000225 GO:0005515
Cca06g01997 706 SMART arm_5 186 226 IPR000225 GO:0005515
Cca06g01997 706 SMART arm_5 136 184 IPR000225 GO:0005515
Cca06g01997 706 SMART arm_5 312 352 IPR000225 GO:0005515
Cca06g01997 706 Gene3D - 168 267 IPR011989 -
Cca06g01997 706 SMART BTB_4 540 637 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01997 Cca-Chr6 35162010 35169596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01997 199 405 U-box Gene Family AT3G46510 30.000 2.05e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca06g01997 BTB 5e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01997 - - gmx:100819832 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01997 06 35162010 35169596 Cca02g02403 02 45073161 45081148 PCT