Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01993 ATGCTGGCGAATCATTTCCAGAACGGCATCGAAACGGCGAGGCTTGTTTGGTCGCGGATTCCTAACTCCGAAGAGTCGCAGCTCCTCGACGACGCCGTTGGAATCCTCAAGAACAACGACGGAGGCGGCGTCGAGAGCCTTGACTATGAAGTCGTGGAGAATTTTGCTTATCGCGAGGAACAGGCGCAGAGAGGGAAGCTGTATGTGAGTTATTTGCTGGTGGTGAAATGGTTCTTTGCGTTGCTCATTGGCATTTGTACAGGACTTGCTGCTGTTTTTATCAATATTGCTGTTGAAAATTTTGCTGGCTGGAAGTTCTCCGTGACCTTTGACATAATTCAGAAATCATATATTGCTGGTTTTGTCGTATATGTCCTGATCAACTTGGTTTTGGTGTATTCCTCTGTATATATTATCACACAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAAGGTTACTTAAATGGAGTTGATATTCATGGCATCCTTCTTTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGTGGAGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACTAAGTATCATCTAAATTCGAGGTGGTTTCAAGTATTCAAAAGTGACCGCGATCGCCGTGATCTTGTAACCTGTGGATGTGCAGCTGGAGTTGCTGCAGCATTTAGAGCTCCAGTTGGTGGTGTGTTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTCATGTGGCGTGTCTTCTTCACTTCTGCTGTTGTGGCTGTAGTGGTCCGAGCTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACACTTCGGGTCTGGTGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCCTTTGCAGAGTTATTGCCAATGGCTATTATTGGGGTTATTGGAGGCCTACTAGGAGCTTTATTCAATCAGCTTACACTTTATATTACTACTTGGCGTCGAAATTATCTTCACAAGAAAGGGAACAGGGTCAAGATCATTGAAGCATGCCTTGTATCCATTTTAACATCAGCCATTTCATTTGGCCTGCCTCTTCTAAGAAAATGTACTCCTTGCCCTGAGTCTGATCTTGCATCTGGTATTGAATGTCCACGACCACCTGGAATGTATGGGAATTATGTTAATTTTTTTTGTAGCAAAGACAAGGAATACAATGATCTTGCAACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATAAATGAGTACAGTTCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATGCTTTAGCAGTGATCACGTTTGGTACTGCTGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGGCGCCTTGTTGGCATGTTTGTCGTAAAATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCTCAAATAACTTAAAATTTTTACCTCTTATTATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAACGAAGGTATCTACGAGGAGCAGGCTCAATTGAGAGGCATTCCATTACTGGAATCAAGGCCTAAATATGAGATGCGAAATATGACAGCAAAGGAAGCCTGTGGGAGTGGAAGGGTGGTCTGTTTCCCTCGTGTCGTCAAGGTTTCAGATGTAGTTTCCATTCTTCGGAGCAACAAACACAATGGCTTTCCAGTGATTGATCACACAAGAAGTGGAGAACCACTGGTTATTGGATTAGTGCTTCGTAGTCATTTATTGGTAATTCTGCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGACCCCAGAGGTGGGGGCAGATCAATTAGGCATGATTCTGGTGAATTTGCAAAGCCTGTATCTAGTAAAGGAATATGTATTGATGATATACATCTAAGTTCAGATGACTTAGAAATGTACATCGATCTTGCCCCATTTTTGAATCCCTCACCATATATTGTACCAGAAGATATGTCTTTGACAAAGGTATACAATCTTTTCCGTCAACTTGGTCTAAGGCATTTATTTGTTGTTCCTCGTCCATCTCGCGTGCTTGGTTTGATAACGAGAAAAGATTTATTGATTGAGGAGAAAGAAAATGTGAATACATTAGAGCTTCAGTCAACTAGTGTAAGTAAAATCTGTGCAATTGTGTTGCCTTAG 2340 0.4179 MLANHFQNGIETARLVWSRIPNSEESQLLDDAVGILKNNDGGGVESLDYEVVENFAYREEQAQRGKLYVSYLLVVKWFFALLIGICTGLAAVFINIAVENFAGWKFSVTFDIIQKSYIAGFVVYVLINLVLVYSSVYIITQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYITTWRRNYLHKKGNRVKIIEACLVSILTSAISFGLPLLRKCTPCPESDLASGIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVITFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLESRPKYEMRNMTAKEACGSGRVVCFPRVVKVSDVVSILRSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGRSIRHDSGEFAKPVSSKGICIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEEKENVNTLELQSTSVSKICAIVLP 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01993 779 Pfam CBS domain 596 646 IPR000644 -
Cca06g01993 779 Pfam CBS domain 707 753 IPR000644 -
Cca06g01993 779 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 773 - -
Cca06g01993 779 CDD CBS_pair_voltage-gated_CLC_euk_bac 596 753 - -
Cca06g01993 779 SMART cbs_1 595 647 IPR000644 -
Cca06g01993 779 SMART cbs_1 709 757 IPR000644 -
Cca06g01993 779 Gene3D Clc chloride channel 69 575 - -
Cca06g01993 779 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca06g01993 779 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca06g01993 779 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca06g01993 779 PRINTS Chloride channel signature 470 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca06g01993 779 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca06g01993 779 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca06g01993 779 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca06g01993 779 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 773 - -
Cca06g01993 779 Gene3D - 592 759 IPR046342 -
Cca06g01993 779 ProSiteProfiles CBS domain profile. 706 763 IPR000644 -
Cca06g01993 779 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca06g01993 779 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca06g01993 779 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca06g01993 779 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca06g01993 779 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca06g01993 779 SUPERFAMILY CBS-domain pair 579 753 IPR046342 -
Cca06g01993 779 SUPERFAMILY Clc chloride channel 54 576 IPR014743 -
Cca06g01993 779 CDD ClC_6_like 45 574 - -
Cca06g01993 779 Pfam Voltage gated chloride channel 134 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01993 Cca-Chr6 35109080 35119145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01993 1 769 Ion Channels AT5G26240 83.506 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01993 K05016 - gmx:100811908 1469.14