Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01988 ATGAATCCTTTGGAAGCTGCTGTTTGCGGTGCAGCAGTGGAAGGAGCCGTGGCTTCAGGCATCAATGATCCCTTTGGGAACTTGGACTTGTTAACTATCCAAGCTACACCTCTTGCCATAGGGATTCGAGCGGATGGGAACAACTTTGTCCCTGTAATTCCTAGGGATACCACAATGCCAGCACGGAAGGAGCTAGTTTTCACAACTGTTCATGATAATCAAACCGAGGCATTGATCCTTGTCTATGAAGGTGAGGGGAAAAAGGCAGAAGAAAACCACCTATTGGGATATTTCAAGATAATGGGAATACCTGCTGCTCCCAAAGGAGTCCCAGAAATCAATGTTTGCATGGACATAGACGCTGCAAACGTGCTAAGAGTTTTAGCTATTGTCCTGATGCCTGGTTCTCGCGAACCTGCAATTCCTGTTATGGAAGTAAGGATGCCAACTGTGGATGATGACCATGGCTGGTGCGCTCAGGCGCTAAATAGAACTTACGGTGCCTCATTGGATTTGCTTACTCTCCGGAAGAAGGCATAA 540 0.4704 MNPLEAAVCGAAVEGAVASGINDPFGNLDLLTIQATPLAIGIRADGNNFVPVIPRDTTMPARKELVFTTVHDNQTEALILVYEGEGKKAEENHLLGYFKIMGIPAAPKGVPEINVCMDIDAANVLRVLAIVLMPGSREPAIPVMEVRMPTVDDDHGWCAQALNRTYGASLDLLTLRKKA 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01988 179 Pfam Hsp70 protein 1 133 IPR013126 GO:0005524|GO:0140662
Cca06g01988 179 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 26 146 IPR029047 -
Cca06g01988 179 PANTHER HEAT SHOCK PROTEIN 70KDA 1 178 IPR013126 GO:0005524|GO:0140662
Cca06g01988 179 PRINTS 70kDa heat shock protein signature 1 20 - -
Cca06g01988 179 PRINTS 70kDa heat shock protein signature 110 126 - -
Cca06g01988 179 PRINTS 70kDa heat shock protein signature 29 48 - -
Cca06g01988 179 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 1 178 - -
Cca06g01988 179 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 31 136 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01988 Cca-Chr6 35055084 35055623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01988 1 129 Calmodulin-binding Proteins AT3G12580 48.485 1.38e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01988 K09489 - gmx:100809773 337.421