Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01987 ATGGCTACCAAATTTCTGGTTATTTTTCTTTTATGTTCCTTTGTTCTAAGGAAGGCTAACTCAATTGAACTAGGGTCCAGCTTTGTCGCTGGCACCAATTCATCTTGGCGATCATCCTCTGGTGATTATGCCTTTGGCTTCTATCACCTTCGTAGTGGCCGTTATCTAGTTGGAATTTGGTTTGACAAGATTCCACAGAAAACACTGGTTTGGTCTGCAAACCGTGACAAACCGGTTGAAATTGGATCGACCATCAATCTCACACGAAGTGGTCAATTTTTGCTCCAACCTATCAATGGTGCTTTATTTCCAATATACAATGGAACAAACACAACTTCTGCGGTGATGCAGAACGATGGGAATTTCGTCTTGATGGATTCACTTTCCAAAGTTATTTGGCAGAGCTTTGATTCACCCACGGATACTCTTCTATTAGGCCAAACTTTGAATACTGGTCAAAAGCTCTTCTCCAATACCAATGGATTCGTAGACTACTCAACAGGGCAATACAGTTTGGAGATCCAATATGATGGCAACATTCTTCTTAAAGCTTATCGGTACACAGATTCTGCCTACTGGTGGAGTGACACTACCCAAAACAAAGGTGTGCGAATTGTTTTTAACAAAACAACAGCTTCTCTTTACGCGGTTAATGACACCAACCAAATCATATATAACATGTTGGAAACTCAGGAAATAGGTACAATCGAAGATTACTACCATCGTGCGCTGGTCAATGACCAGGGAAATTTTCAGAAGTTGATTTACCCAAAAGAAAATGGAAGTGAGTGGATTGTTGAGGGGAAGGTCGTGGAAAAGCCTTGCACTATAACGGCCCTTTGTGGGGTGTATGGCTTTTGCAATGGTTCTGACAACGAAACATATAGTTGTGAATGCTTGCCTGGCTATACTCATTTTGATCCAAGTGCACCCTCCAAAGGGTGCTATCTTAGTCAGGCCAAGGACTTGTGTGCTGCAAATTCCTCTACCCCAAACTTCAAGGTGGAAGTGAAAGAAGTTCAAGATGCTGATATAATACCAAACGATGGCCTTTTTTTTCTTAATCTAGAAGTCATAAATAACGCGGATTTGGAAAGCTGCAAGAAGGAACTGATGGATGACTGTCAATGCATGGCTGCGGTTTTAGAAGACACTGCTTGCTTTAAGAAGAAGTGGCCGATTATAAATGCCGTTAGAATCATCCCAACCACCAGTAATCATGTGATGCTGATTAAAGTTCCTCTGGTTGACAATGAAAAGGATTCATCGTCTTTGGTTGTTTTGATAGTGGCTCTCATCCTTTGCTCATTCCTTGCTGTATTATTTGCAGCTCCTGCCATATATCATCACCCCTTTTGTCTGTATCTCATACACAAAAGGACACCGCCAAAGCCAAAGCCTGTGGATATCAATCTAAAGGCCTTCTCATTCCAGCAGCTAAGAGAAGCAACAAATGGATTCAAGGACAAACTCGGTCGAGGTGCCTATGGTACAGTCTATGGTGGGATTTTAATCTCGGAGGGTCAACAGGTTGAGGTTGCTGTCAAACAATTAGAGCAATTAGAAGACCAAGGTGAGAAAGAATTCGTTACAGAAGTTCAAGTTATTGCTCTCACTCATCATAGAAATCTTGTTGGGTTATTGGGCTTTTGCAATGAGCAGAATCATAGGCTTCTGGTTTATGAGAAAATGGAAAATGGGACACTATCCAACTTTCTTTTTGGGGAAGGGGGTAAACCCAGCTGGGAGGGTAGAGTTAGAATTGTGCTTGAAATTGCCAGAGGCTTGTTATATCTCCATGAAGAGTGTGACCAACAAATCATCCATTGTGACATAAAGCCTCAGAATGTCCTTCTTGACTCAAGCTACACTGCAAAGATTTCTGATTTTGGACTGGCAAAGCTACTGATGAAAGATAAAACTCGAACAAACACCAATGCTAGAGGGACAATGGGATATATGGCACCAGAATGGCTCAAAAATGCACCTGTTACTTCAAAAGTTGATATCTACAGCTTTGGTGTCATGTTGTTGGAAATCATATTTTGCAGAAGGCACATTGAGTTGCATCAAATTGAGGATGAAACAAATGGTGATGACATGATACTCATAGATTGGGTTTTATGTCTGGCAAAAGAAAACAATTTAAGAACCACAGTGATTCATGATCTTGAAGTTGAAAATGATTTCAAGAGGTTCGAAAGAATGACAATGGTTGGTTTATGGTGCATAAATCCCAACCCAACTCTTCGACCATCTATGAAAATGGTGGTACACATGTTGGAAGGAAATATAGAAGTGGGTGTTCCACCAATCAACTGA 2322 0.41 MATKFLVIFLLCSFVLRKANSIELGSSFVAGTNSSWRSSSGDYAFGFYHLRSGRYLVGIWFDKIPQKTLVWSANRDKPVEIGSTINLTRSGQFLLQPINGALFPIYNGTNTTSAVMQNDGNFVLMDSLSKVIWQSFDSPTDTLLLGQTLNTGQKLFSNTNGFVDYSTGQYSLEIQYDGNILLKAYRYTDSAYWWSDTTQNKGVRIVFNKTTASLYAVNDTNQIIYNMLETQEIGTIEDYYHRALVNDQGNFQKLIYPKENGSEWIVEGKVVEKPCTITALCGVYGFCNGSDNETYSCECLPGYTHFDPSAPSKGCYLSQAKDLCAANSSTPNFKVEVKEVQDADIIPNDGLFFLNLEVINNADLESCKKELMDDCQCMAAVLEDTACFKKKWPIINAVRIIPTTSNHVMLIKVPLVDNEKDSSSLVVLIVALILCSFLAVLFAAPAIYHHPFCLYLIHKRTPPKPKPVDINLKAFSFQQLREATNGFKDKLGRGAYGTVYGGILISEGQQVEVAVKQLEQLEDQGEKEFVTEVQVIALTHHRNLVGLLGFCNEQNHRLLVYEKMENGTLSNFLFGEGGKPSWEGRVRIVLEIARGLLYLHEECDQQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTNTNARGTMGYMAPEWLKNAPVTSKVDIYSFGVMLLEIIFCRRHIELHQIEDETNGDDMILIDWVLCLAKENNLRTTVIHDLEVENDFKRFERMTMVGLWCINPNPTLRPSMKMVVHMLEGNIEVGVPPIN 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01987 773 SUPERFAMILY Protein kinase-like (PK-like) 465 762 IPR011009 -
Cca06g01987 773 Gene3D Transferase(Phosphotransferase) domain 1 564 767 - -
Cca06g01987 773 Gene3D - 13 137 IPR036426 -
Cca06g01987 773 Gene3D - 138 234 IPR036426 -
Cca06g01987 773 ProSiteProfiles Bulb-type lectin domain profile. 13 137 IPR001480 -
Cca06g01987 773 CDD B_lectin 38 139 IPR001480 -
Cca06g01987 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Cca06g01987 773 SMART serkin_6 485 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01987 773 Pfam Protein kinase domain 488 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01987 773 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 772 - -
Cca06g01987 773 PIRSF SRK 1 773 IPR024171 GO:0004674
Cca06g01987 773 ProSitePatterns Protein kinases ATP-binding region signature. 491 516 IPR017441 GO:0005524
Cca06g01987 773 SMART blect_4 27 139 IPR001480 -
Cca06g01987 773 CDD STKc_IRAK 491 763 - -
Cca06g01987 773 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 197 IPR036426 -
Cca06g01987 773 Pfam D-mannose binding lectin 68 152 IPR001480 -
Cca06g01987 773 ProSiteProfiles Protein kinase domain profile. 485 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01987 773 Coils Coil 504 524 - -
Cca06g01987 773 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 772 - -
Cca06g01987 773 Pfam S-locus glycoprotein domain 237 304 IPR000858 GO:0048544
Cca06g01987 773 Gene3D Phosphorylase Kinase; domain 1 461 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01987 Cca-Chr6 35051554 35053875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01987 393 770 Receptor kinase-like Gene Family AT1G53430 38.442 1.09e-65 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca06g01987 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01987 - - pvu:PHAVU_002G046100g 1235.32