Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01986 ATGTCTTTAGCTATCTTTCTCCCTTGTATTCTAGCACTTCTTTCACTTTCACATTTGCATGGCTTACATGCCAAAGAAATAGAACCAAATACAAGCATCACTGCCGGATCAAATTCCACATGGAAGTCACCCTCAGGTGATTTTGAATTTGGATTCTACGCTCTCCCCAATGATCTCTTTCTTGTGGGAATATGGTTTGGAAGAACCAAAAATAGAACACTGGTATGGTACCAGAGTCCCCCTGTGCAGCCAAATTCCCAAATCCAATTCACTTCTGCAGGACAACTTGTGGTGGCATACCCAAATGGAACTACCGCTTATAGCATATATAGTGAAGGAAACGGTGGTGCTGCAGCTTCTGCCAACATGCAAGATGATGGCAATTTTGTCATGAGGGATAACAACTTCAAATCTGTGTGGGAAAGTTTCATGTTTCCAGCCGACACAATCCTTCCGAACCAAACCTTGCCGAGTAACAACATCCTCTATTCCAAGGGGAAAGGAGCTTCAAACTACTCAAGGGGGAATTTCATGTTACAAATGCAAAATGATGGAAACTTGGTTCTCAAAGCGTACCAATGGTCAGACCCTGCTTATTGGTACACTTCAACCGGAGGCAATGTGAGTTTGGTGTTTAATGCTACTAGTGCTCTCATGTACCTTGTCAGCGGCTCAAGGAACATCTACTCTCTACACAACAACACTCCAACCCCGGTGAATGATTACTATCACCGCGCTACAATAGATGAGAATGGAAATTTCCAGCAATATGCATATCACAAAAGGAATGGCACCGGGTGGAAGAGGGTTTGGAGAGCTGTGGAGGATCCTTGCAGAGTGAATGCTGTTTGTGGTGCGTATGGCTTGTGCACTTCTTCTGACAATGAATCAACCAAGTGTGAGTGCATTCCAGGTTATATCCCGTTGGATCATGAAGATGTGTCCAAAGGGTGTCACCCACCAGCAGTGATCAATTACTGTGCAGAGACAAACTTCAAGCTGCAGGTGTTTGAGGACACTGATTTCCAATTTGATACTAGTTTTGTACACATAACTGATGTTGATTGGGAAGGTTGTAAGAAGTATGTAATGGATGATTGTAATATCATTGCTGCAACTTATAACGCTTCCGACAAAACATGTGCCAAGAAGAGGTTGCCCTTGCTGAATGCTAGGAATAGCTCTTCTTCAAAGAGGCAGAAAGCGCTACTTAAAGTTTCTAACAATGTTGAGTCTCGGGAAACTAAAGTTCCCAAGAAGAGTTTTAATGTAAGAATATTTTTGAAGGTTATGATTGCAGTTACTGCAACTCTTGCCTGTTTCTTTGGTGCACTTGCTGTCTATTATCATCCTTTCACTCAGAGACTAACAAGAAGGAAGACGTATCTGAATACAAATGCTATCGGAATCAACTTCAGAGAATTCACGTTCCAGGAACTGCATGAAGCAACGAATGGATTCACTAAGATGCTTGGAAAGGGATCTTCAGGCAAAGTCTACCGTGGTGCTTTAATAATAGATGATGTAGAGATTGGTATTGCAGTCAAGAAACTGGAAAAGAAAATTGAGAAAAGTGAAGGTGAATTCATGACTGAGCTCAAAATTATTGGCCGTACCCATCACAGAAATTTGGTGAGGCTTTTGGGCTTTTGCCTCGAGAGTAGTCACCGAATTCTTGTGTACGAGTTGATGCCAAACGGAGCACTGTCCGATTTTTTGTTTGGAGAGGGAGGAAGGCCTCACTGGGGTCAAAGGATTGAGATGGCTCTTGGTGTTGCAAGAGGCTTACTATACTTGCATGAAGAGTGTCACACCCAAATCATACATTGTGATATCAAGCCCCAAAATGTGTTACTTGATGCCAATCACACAACAAAGATTGCGGATTTTGGGCTTTCCAAGATTTTGAACAAAGATCAAACTAGAACAAGCACTAATTTAAGAGGGACAATAGGGTATATGGCACCTGAATGGCTAAAGAGTGCACCAATAACTGCCAAAGTTGACATATACAGTTTTGGTGTTATGCTATTGGAGATTATTTGCTGCAGGAAGCACTTTGAGTCTTGTCAGGATGAAGGAGACAGTGAAGATGATGATTTGGTTCTTTCAAATTGGGTTTTAAGGTGTGTGGTGTCTAGAAAACTAGAGGTAGTGGTGAGACATGACTCAGAAGTGCTGAATGATTTCGAAAGGTTTGAGCAAATGGCCTTGGTTGGACTATGGTGTGTTCATCCAAATCCAGCTCTTAGACCTTCAATGAAGCAGGTGATGCAAATGCTTGATGGAACTGTGGAAGTTGGGGTTCCTCCTTTGGTTTATGATCAAATGATGGCATACCAAGCCATATAG 2352 0.4222 MSLAIFLPCILALLSLSHLHGLHAKEIEPNTSITAGSNSTWKSPSGDFEFGFYALPNDLFLVGIWFGRTKNRTLVWYQSPPVQPNSQIQFTSAGQLVVAYPNGTTAYSIYSEGNGGAAASANMQDDGNFVMRDNNFKSVWESFMFPADTILPNQTLPSNNILYSKGKGASNYSRGNFMLQMQNDGNLVLKAYQWSDPAYWYTSTGGNVSLVFNATSALMYLVSGSRNIYSLHNNTPTPVNDYYHRATIDENGNFQQYAYHKRNGTGWKRVWRAVEDPCRVNAVCGAYGLCTSSDNESTKCECIPGYIPLDHEDVSKGCHPPAVINYCAETNFKLQVFEDTDFQFDTSFVHITDVDWEGCKKYVMDDCNIIAATYNASDKTCAKKRLPLLNARNSSSSKRQKALLKVSNNVESRETKVPKKSFNVRIFLKVMIAVTATLACFFGALAVYYHPFTQRLTRRKTYLNTNAIGINFREFTFQELHEATNGFTKMLGKGSSGKVYRGALIIDDVEIGIAVKKLEKKIEKSEGEFMTELKIIGRTHHRNLVRLLGFCLESSHRILVYELMPNGALSDFLFGEGGRPHWGQRIEMALGVARGLLYLHEECHTQIIHCDIKPQNVLLDANHTTKIADFGLSKILNKDQTRTSTNLRGTIGYMAPEWLKSAPITAKVDIYSFGVMLLEIICCRKHFESCQDEGDSEDDDLVLSNWVLRCVVSRKLEVVVRHDSEVLNDFERFEQMALVGLWCVHPNPALRPSMKQVMQMLDGTVEVGVPPLVYDQMMAYQAI 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01986 783 Gene3D - 21 144 IPR036426 -
Cca06g01986 783 Pfam Protein kinase domain 489 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01986 783 Gene3D - 147 274 IPR036426 -
Cca06g01986 783 ProSitePatterns Protein kinases ATP-binding region signature. 491 517 IPR017441 GO:0005524
Cca06g01986 783 ProSiteProfiles Protein kinase domain profile. 485 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01986 783 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 203 IPR036426 -
Cca06g01986 783 Pfam S-locus glycoprotein domain 240 308 IPR000858 GO:0048544
Cca06g01986 783 SUPERFAMILY Protein kinase-like (PK-like) 472 770 IPR011009 -
Cca06g01986 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Cca06g01986 783 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 773 - -
Cca06g01986 783 Gene3D Phosphorylase Kinase; domain 1 460 563 - -
Cca06g01986 783 SMART blect_4 32 146 IPR001480 -
Cca06g01986 783 SMART serkin_6 485 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01986 783 CDD STKc_IRAK 491 763 - -
Cca06g01986 783 Gene3D Transferase(Phosphotransferase) domain 1 564 768 - -
Cca06g01986 783 Pfam D-mannose binding lectin 79 159 IPR001480 -
Cca06g01986 783 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 773 - -
Cca06g01986 783 PIRSF SRK 1 781 IPR024171 GO:0004674
Cca06g01986 783 ProSiteProfiles Bulb-type lectin domain profile. 26 144 IPR001480 -
Cca06g01986 783 ProSiteProfiles EGF-like domain profile. 274 312 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01986 Cca-Chr6 35037444 35039795 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01986 432 766 Receptor kinase-like Gene Family AT5G45780 37.059 5.54e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca06g01986 Pkinase 1.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01986 - - gmx:102662509 1246.11