Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01984 ATGGCTACCAAATTTCTTGTTCTTTTTGTTTTATGCTCCTTTGTTCTAAGGAACGCTTACTCAATTGAACTAGGGTCCAGCTTTGTCGCTGGCACCAATTCATCTTGGCGATCATCCTCTGGTGATTATGCCTTTGGCTTCTATCACCTTCGTAGTGGCCGTTATCTAGTTGGAATTTGGTTTGACAAAATTCCAGAGAAAACACTGGTTTGGTCTGCAAACCGTGACAAACCGGTTGAAATTGGATCAACCATCAATCTCACACGAAGTGGTCAATTTGTGCTCCAACCTATCAATGGTGCTTTATTTCCAATATGCAATGGAACAAACACAACTTCTGCAGTGATGGGGGACGATGGGAATTTCGTCTTGATGGATTCACTTTCCAAAGTTATTTGGCAGAGCTTTGATTCACCCACGGATACTCTTCTATTAGGCCAAACTTTGAATACTGGTCAAAAGCTCTTCTCCAATACCGATGGATCCGTAGACTACTCAACAGGGCAATACAGTTTGGAGATCCAACAATCTGATGGCAACATTCTTCTTAAAGCTTATCGGTACACAGATTCTGCCTACTGGTGGAGTGACACTGCCCAAAACAAAGGTGTGAGAATTGTTTTTAACAAAACAACAGCTTCTCTTTACGCGGTCAATGCCACCAACCAAATCATACGTTACATGGCAACTAAGGAAATAGGTGCAATTGAAGATTACTACCATCATGTGCTGGTCAATGACCAGGGAAATTTTCAGAAGTTGATTTACCCAAAAGAAAATGGAAGTGAGTGGAAAGTTATGTGGAATGCCATAACAAAGCCTTGCACTGTGACAGCCCTTTGTGGGGTATATGGCTTTTGCAATACAATTGGTTCTGACACCGAAACATACAGGTGTGAATGCTTGCCTGGCTATACACCTTTTGATCTAAGTGCACCCTCCAAAGGTTGCTATCTTAGTCAGGCCAAGAACTTGTGTGCTGCAAATTCCTCTTCCCCAGACTTCAAGGTGGAAGTGAAAGAAGTTCAAGATGCTGATATACCAAACCCTGGCTATTTTTTTCTTGATCTACAAGTCATAAATAACGCGGATCTGGAAAGCTGCAAGAGGGAACTGTTGGATGACTGTCTCTGCATGGCTGCTGTTTTCAATGGCACGGCTTGCAATAAGAAAAAGTTTCCAATTATAAATGCTGATAGAATCATCCCAGACACCAGTAATCTTGTGATGCTGATTAAAGTTCCTCTGGTTGACAATGAAAAGGATTCATCGTCTTTGGTTGTTTTGATAGTGGCACCCATCCTTTGCTCATTACTTGCTGTATTGTTTGCAGCTACTGCCATATATCATCACCCCTTTTGTCTGTATCTCATACACAAAAGGACACCGCCAAAGCCAAAGCCAAAGCCTGTGGATATCAATCTAAAGGCATTCTCATTCCAGCAGCTAAGAGAAGCAACAAATGGATTTAAGAACAAACTCGGTCAAGGTGCCTATGGTACAGTCTATAGTGGGATTTTAATCTTGGAGGGTCAACATGTTGAGGTTGCTGTCAAACAATTGGAGCAAATAGAAGACCAAGGCTTTTGCAATGAGCAGAATCATAGGCTTCTGGTTTATGAGAAAATGGAAAATGGGACACTATCCAATTTTCTTTTTGGAGAAGGGGGTAAACCCAGCTGGGAGAGTAGAGTCAGAATTGTGCTTGAAATTGCCAGAGGCTTATTATATCTGCATGAAGAGTGTGACCAACAAATCATCCATTGTGACATAAAGCCTCAGAATGTTCTTCTTGACTCTAGTTACACTGCAAAGATTTCAGATTTTGGACTGGCAAAGCTACTCATGAAAGATAAAACTCGAACAAACACCAATGCTAGAGGGACAATGGGATATATGGCACCAGAGTGGCTCAAAAATGCACCAGTTTCTTCAAAGGTTGATATCTACAGCTTTGGTGTCATGTTGTTGGAAATCATATTTTGCAGAAGGCACATTGAGTTGCATCAAATTGAGGATGGTACAACGGGTGATGACATGATACTCATAGATTGGGTTCTATATCTGGTTAAAGAAAACAATTTAGGAACCGCAGTGATTCATGATCTTGAAGTAGAAAGTGATTTCAAGAGGTTCGAAAGAATGACAATGGTTGGTTTATGGTGCATAAATCCCAATCCAACTCTTCGACCATCTATGAAAATGGTGGTACACATGTTGGAAGCGGCATTGAATTTTCATGCTGACAATTCTATTGCGATGTATGGACCATGA 2274 0.4116 MATKFLVLFVLCSFVLRNAYSIELGSSFVAGTNSSWRSSSGDYAFGFYHLRSGRYLVGIWFDKIPEKTLVWSANRDKPVEIGSTINLTRSGQFVLQPINGALFPICNGTNTTSAVMGDDGNFVLMDSLSKVIWQSFDSPTDTLLLGQTLNTGQKLFSNTDGSVDYSTGQYSLEIQQSDGNILLKAYRYTDSAYWWSDTAQNKGVRIVFNKTTASLYAVNATNQIIRYMATKEIGAIEDYYHHVLVNDQGNFQKLIYPKENGSEWKVMWNAITKPCTVTALCGVYGFCNTIGSDTETYRCECLPGYTPFDLSAPSKGCYLSQAKNLCAANSSSPDFKVEVKEVQDADIPNPGYFFLDLQVINNADLESCKRELLDDCLCMAAVFNGTACNKKKFPIINADRIIPDTSNLVMLIKVPLVDNEKDSSSLVVLIVAPILCSLLAVLFAATAIYHHPFCLYLIHKRTPPKPKPKPVDINLKAFSFQQLREATNGFKNKLGQGAYGTVYSGILILEGQHVEVAVKQLEQIEDQGFCNEQNHRLLVYEKMENGTLSNFLFGEGGKPSWESRVRIVLEIARGLLYLHEECDQQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTNTNARGTMGYMAPEWLKNAPVSSKVDIYSFGVMLLEIIFCRRHIELHQIEDGTTGDDMILIDWVLYLVKENNLGTAVIHDLEVESDFKRFERMTMVGLWCINPNPTLRPSMKMVVHMLEAALNFHADNSIAMYGP 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01984 757 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 198 IPR036426 -
Cca06g01984 757 PIRSF SRK 1 528 IPR024171 GO:0004674
Cca06g01984 757 PIRSF SRK 525 752 IPR024171 GO:0004674
Cca06g01984 757 PANTHER SERINE/THREONINE-PROTEIN KINASE 528 747 - -
Cca06g01984 757 Pfam D-mannose binding lectin 68 152 IPR001480 -
Cca06g01984 757 Gene3D Transferase(Phosphotransferase) domain 1 543 753 - -
Cca06g01984 757 ProSiteProfiles Protein kinase domain profile. 488 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01984 757 CDD B_lectin 38 139 IPR001480 -
Cca06g01984 757 SMART serkin_6 488 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01984 757 SMART blect_4 27 139 IPR001480 -
Cca06g01984 757 Pfam Protein kinase domain 528 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01984 757 ProSitePatterns Protein kinases ATP-binding region signature. 494 519 IPR017441 GO:0005524
Cca06g01984 757 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 528 - -
Cca06g01984 757 Gene3D - 139 278 - -
Cca06g01984 757 Gene3D - 17 137 IPR036426 -
Cca06g01984 757 Gene3D Phosphorylase Kinase; domain 1 464 528 - -
Cca06g01984 757 SUPERFAMILY Protein kinase-like (PK-like) 466 741 IPR011009 -
Cca06g01984 757 ProSiteProfiles Bulb-type lectin domain profile. 21 137 IPR001480 -
Cca06g01984 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Cca06g01984 757 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 528 - -
Cca06g01984 757 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 528 747 - -
Cca06g01984 757 Pfam S-locus glycoprotein domain 237 307 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01984 Cca-Chr6 35034302 35042932 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01984 474 742 Receptor kinase-like Gene Family AT5G10290 39.465 1.13e-54 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca06g01984 Pkinase 4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01984 - - pvu:PHAVU_002G046100g 1175.23