Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01982 ATGGAATCGGGCGTGAGATCGAGTGGTTCTGGGGTTTTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTTCCACCTCTAGGAGGCTTTATGAATCGAAGAAAAGGGCCAACACTAACGTGTCCATGAGTGACTCTGGGTCAAGCGACGAGTTGTTGATGCCTCCTGGGAGAAGGCTTGGCCCCGAGACTATTCGAGTTTGCAATGGATTGGCTGCCTCTGAGCGTGGTGGTAGTGAAATTAGTCGCAAGAGGGATAAAGTGGAACAAATTAGGGGTAGTGGGGATGGTATTGCTGCGGAGAGAGGTTTGGAGCATAGGGAAAGGAAGCGTGCTAAGTTGGATGTGTACGATTTCGATGAATACGATGGTATGAATGTGGAAAACATGAAGAGGAGGCATTTGGATGGTAATGGAGTTGGTTACGGAGGAGGAAGGTTTGTAGGATCAGTGCATGCTTCTAGAATTGGCGTTGATATGGAATTCAAAGCAGGGTCAAGTGGACGTGTTCTTGATAAGAGAAAGAACTCCCCTTATGACAGGCCAGGTGGCTCGTACCCTGGGGATAATGTTGATCACAGTCGGTTCAAGATGAACAGGGATGGGGCTCGGTTACCTCTACCCTCACCGAAGGAGAAGTTTAATTCAGATGAGACCATTAGGGTTCAGGGAAAAAATGGTGTTTTGAAGGTAATGGTAAATAAGAAGAAGGTGAGTGGGCCATCAGAACACTATGATCATCGCAAACCTGTGGAAAGCAGGCAAAGGTTGAAGAGTGAAGAGACTGCCAAGAGGTTGAAGAGCGAAGAGAATGCCAAGAGGTTGAAGAGTGAAGAGAATGCCAAGAAGTTGAAGAGTGAAGAGAATGCCAAGAGGTTGAAGAGTGAAGAGACTGCCAAGAGGTTGAAGAGTGAAGAGACTGCCAAGAAGTTGAAGAGCGAAGAGACTGCCAAGAGGAATGTTCCAATTCGTCCTTCATTGTACTTGGAAACCAAACTTGTTGAGAAACCAGGATTACTTAAGAGGCCCGAGAAGAAGCCAATAGCATCAAGAAAATCTTTGTCAGGCAAGGACAGTAAGGGTGATGAAGGGGATTCAGATAACAGTGACACATCATTGAATCCTGGAATAAGAAATACTGAAGCTCATAAGCCTGTGAAAAAAATAATCTCTGAGGATGAGCAGACTCCAGGGCAAGAAAAACTCCCAACCACAAGAACAAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACTGAAAAACAGAAACTGCGGGAAAAAATCAGGGAGATGCTGCTGAGTTCAGGTTGGACCATAGACTATCGACCTCGAAGGAACAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAACGATGATGCTAATGAGGCCATGTTCAAAGGGGACAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAGCTAACAAGGAAAACTAGGAAgaaaatggagaaagaattgaaaaagaaaaagaaaagatatgatagtgaaaatgataatgaaaaagaGCCTCAAATAAGAAGATCTGCCAGCAACAAACGTGATATGAATAGCACAGATAGTGATAGCGACAGGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATAAAAAATAAAATGTTTGAGAATACCATTATCAGTGCTCGCTCTAAAATTCAGAATGCTAACCATCACTCAAGTAATGGAATAGAAAATTCATTATTTGGAAGTGATCCTCATATACATGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATTAAATTCAGAAGCTGATGGTTTTGTACCATATATGGGAAAACGGACAGTTCTTTCCTGGTTGATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGAAAGAAAGTCCTGCTGGAGGGGTGGATCACAAGAGATGGTATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACTGCCTTATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCAGTTGATACTGATGGCAACGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCCGGTGAATGGCATTGTCCAAATTGCACATGTAAATTTTGTGGCATAGCCCGTGGTACTTCTGAAAAAGATGATGCATCTGTGTATGTCCTACGTACTTGCAACTTATGCGAGAAGAAATATCATGACTCTTGCACTAAGGAGATGGATACCCTTCCTAATAACTTCAATACATCAAGCCTTTCTTTTTGTGGGAAAGAATGCAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGGGGGATTTTCATGGTCTCTTGTTCATAGAACAGATGAAGACTCAGAGGCAGCTTGCAGGGGAATTACACAGAGGGTAGAATGCAATTCCAAGCTGGCTATTGCACTGACCGTGATGGATGAATGCTTTTTGCCTGTTATTGATCGGAGGAGTGGGATAAATTTAATCCGTAATGTTTTATATAATAGTGGATCAAACTTTAGTCGTTTGAGTTATAGTGGCTTTTACACTGCGATTTTGGAGAGAGGAGATGAAATCATAGCTGCAGCATCTATCAGGTTCCATGGAACTATGATAGCAGAGATGCCATTCATTGGAACTCGTCACATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGGCACTTTGCTCTCTGAAGGTTGAAAAGCTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAACAGCTTTTGGCTTCACGTATCTAGATGGTTCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGCCTTCCCTGGTATAGATATGTTACAAAAGTTGCTAGTGGAACAAGGAAAACATGAGGGCAATACAACCACAGGTTCTGAGAAAATGGAAAATGGAGACAATTATTTTATTGAGACCAAAATGGGAAATAGGTCAGATATGGGTTCAACTCCGCAAGATCCTCATGGAAGTGATGATGTTAGTTCAAATCCTGCTAATGAGTCAAATGATGAATGCAGCGATGCTTCTCAAGAACTAAACAACCATGTTTTGGTCGATGGCACTCTCTGTTCCAAATCTCCTTCTGATGAAATGGTGTCTGAGTCAGTCTCAGATAAATGTGTTTCTCCTTCTAGAACTAGTCACAGTGCACTACAAATGAAGAATGAATTAGTGACTGCTTCTCCTGCTGATAAATTAAATCCTTCCAAAAGTCAATCCATTTCTCTGAATGACACTTGTTTGAGTAGTCACCCATTAGATGTTCTGAAAGCTCAAACTTCGGTTCAGGAAACTGCTTGTTCAGATCCATGTTCAGCAGAAAACCTTGACAAGAAATTTCACTCATCCACTGCTATGAATTGTGATTCATCGGAACTTGACATGAATCCAGTGTTGGATTCTCAAATGGCAGACAATACTACGCCTTCTAAAGTGGTTCATATGAATGACGCTCTTGAAATTATTCCTTCAGGGAAATTATCAGGAGAGAATGTTACAAAGGGGAATAATGAAAATGTAGATGTCTCCATTTCTGCTCTCAATCATGCGAAGGACAGTTATTTGCAAGTAGGATCTGATGCCAATGGGGAAATTGGATGTGAGAATGATAAGGATTTACATTTGAACCCAGGAGTTGCTTCAAATGAAATGGATCTTGATGAAAGTGGCCTTAATGCTTCAGGTGATAGTTCCGAGACTATTCTGGTCTAA 4053 0.4148 MESGVRSSGSGVLVKSRNSSGCLIVRKKGDGLGATASTSRRLYESKKRANTNVSMSDSGSSDELLMPPGRRLGPETIRVCNGLAASERGGSEISRKRDKVEQIRGSGDGIAAERGLEHRERKRAKLDVYDFDEYDGMNVENMKRRHLDGNGVGYGGGRFVGSVHASRIGVDMEFKAGSSGRVLDKRKNSPYDRPGGSYPGDNVDHSRFKMNRDGARLPLPSPKEKFNSDETIRVQGKNGVLKVMVNKKKVSGPSEHYDHRKPVESRQRLKSEETAKRLKSEENAKRLKSEENAKKLKSEENAKRLKSEETAKRLKSEETAKKLKSEETAKRNVPIRPSLYLETKLVEKPGLLKRPEKKPIASRKSLSGKDSKGDEGDSDNSDTSLNPGIRNTEAHKPVKKIISEDEQTPGQEKLPTTRTKEGKIKRGSGTEKQKLREKIREMLLSSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDANEAMFKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKKRYDSENDNEKEPQIRRSASNKRDMNSTDSDSDREKLSSFIKQGSKSIKNKMFENTIISARSKIQNANHHSSNGIENSLFGSDPHIHGRKSKKHGRCTLLVRSSNKGLNSEADGFVPYMGKRTVLSWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPLPYQNIYLESGVSLLQCQIDAWNRQEHSEKIGFHSVDTDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIARGTSEKDDASVYVLRTCNLCEKKYHDSCTKEMDTLPNNFNTSSLSFCGKECKELSEHLKKYLGTKHELEGGFSWSLVHRTDEDSEAACRGITQRVECNSKLAIALTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRLSYSGFYTAILERGDEIIAAASIRFHGTMIAEMPFIGTRHIYRRQGMCRRLFSAIESALCSLKVEKLVIPAIAELTHTWTTAFGFTYLDGSLRQEMKSLNMMAFPGIDMLQKLLVEQGKHEGNTTTGSEKMENGDNYFIETKMGNRSDMGSTPQDPHGSDDVSSNPANESNDECSDASQELNNHVLVDGTLCSKSPSDEMVSESVSDKCVSPSRTSHSALQMKNELVTASPADKLNPSKSQSISLNDTCLSSHPLDVLKAQTSVQETACSDPCSAENLDKKFHSSTAMNCDSSELDMNPVLDSQMADNTTPSKVVHMNDALEIIPSGKLSGENVTKGNNENVDVSISALNHAKDSYLQVGSDANGEIGCENDKDLHLNPGVASNEMDLDESGLNASGDSSETILV 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01982 1350 PANTHER PHD FINGER FAMILY PROTEIN 1 319 - -
Cca06g01982 1350 PANTHER PHD FINGER FAMILY PROTEIN 275 1243 - -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 347 379 - -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 519 568 - -
Cca06g01982 1350 Coils Coil 512 539 - -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 32 71 - -
Cca06g01982 1350 Pfam Tify domain binding domain 682 732 IPR032308 -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 1329 1350 - -
Cca06g01982 1350 CDD NAT_SF 955 1014 - -
Cca06g01982 1350 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 275 1243 - -
Cca06g01982 1350 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 319 - -
Cca06g01982 1350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 747 852 IPR013083 -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 181 432 - -
Cca06g01982 1350 CDD PHD2_CHD_II 760 799 - -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 1334 1350 - -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 1140 1164 - -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 1090 1122 - -
Cca06g01982 1350 Pfam PHD-finger 760 802 IPR019787 -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 1086 1122 - -
Cca06g01982 1350 SUPERFAMILY FYVE/PHD zinc finger 745 801 IPR011011 -
Cca06g01982 1350 SMART PHD_3 759 800 IPR001965 -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 249 331 - -
Cca06g01982 1350 ProSitePatterns Zinc finger PHD-type signature. 760 799 IPR019786 -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 528 568 - -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 416 432 - -
Cca06g01982 1350 ProSiteProfiles Zinc finger PHD-type profile. 757 802 IPR019787 -
Cca06g01982 1350 MobiDBLite consensus disorder prediction 393 407 - -
Cca06g01982 1350 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 946 1033 IPR016181 -
Cca06g01982 1350 Coils Coil 270 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01982 Cca-Chr6 35012698 35021235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01982 1 1060 PHD Transcription Factor Family AT4G14920 48.285 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca06g01982 TDBD 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01982 - - ccaj:109804483 2622.81