Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01981 ATGGAATCGGGCGTGAGATCGAGTGGTTCTGGGGTTTTGGTGGAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTTCCACCTCTCGGAAGCTTTATGAATCGAAGAAAAGGGCCAACATTAACGTGTCCTTGAGTGATTCTGGGTCAAGCGACGAGTTGATGATGCCTCCCGGTAGAAGGGTTGGCCCGGAGACTATACGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGTGGTAGTAGTGAAATTAGTCGCAAGAGGAATAGAGTGGAACTGATTAGGGGTAGTGGAGAAGGTATTGCTTCGGAGAGAGGTTTGGAGCAGAGGGATAGGAAGCTTACTAAATTGGATGTGTATGATTTTGACGAATATGATGGTATGGATATGGAAAACATGAGGAGGAGGCATTTGGATGGTAATGGAGTTGGTCATGGAGGAGGAAAGTTTATGGGATCAGTTCATGCTTCTAGAATTGGCGTTGATAGGGAATTCAAAACAGGGTCAAGTGGACGTGTTCTTGATAAGAGAAAGGACTCCCATTATGACAGGCCCAGTGGCTTGTATCCCGGGGATAATGTTGATCACAGTAGACTCAAGATGAACAGGGATATGGCTCGACTACCGCTACCATCACAGAGGGAGAAGCTTAATTCAGATGGGTCCATTAGGGTTCAAGGAAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAATAAGGTGGGTGTGTCATCAGAACACTATGATCATCGTAAACCTGTGGAAAGCAGGGAAAGCAGGCAAAGGTTGAAGAGTGAAGAGAATGCCACAAGATGGATGAGTGAAGAGAATGCCACAAGATGGATGAGTGAAGAGAATGCCTCAAGATGGAAGAGCGAAGAAAATGCCAAGAAGTTGAAGACCGAAGAGACTGCCAAGAAGAATGTTCCAATTTGTTCTTCATCGTACTTGGAAGCCAAACCTGTTGAGAAACCAAGATTACTTAAGAGGCTGGAGAAGAAACGGATAGCATCAAGAAAATCCTTGTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATCTGGGAATAAAAAATACTGAAGCTCATAAGCCTGGGAAAAAAATAATCTCTGACGATGAGCAGACTCCAGGGCATGAAAAACTCCCCACCACAAAAGTTAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAGCTGCGAGAACGAATAAGGGAGATGCTGCTGAGTTCAGGTTGGACCATAGACTATCGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATCAATCCATCAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGCTAATGAGGCCATGCGCAAAGGAGACAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAGCTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAGAAAAGATATGATAGTGAAAGTGATAATAAAAGAGAGCCGCAGTTAAGACGATCTTCCACCAACAAGCATGAAATGAATAGCACAGATAGTGATAGTGACAGGGAGAAGTTAAGCTCTTTTATAAAGCATGGAAGTAAGTCAATAAAAAATAAAATGTTTGAAAATACCACTATCAGTGCTCGCTCTAAAATTCCAAATGCTAACCATCACTCAAGTGACGGAATAGAAAAATCATCATTTGGATGTGATCCTTATATACATGGACGGAAAAGTAAAAAACATGGAAGATGTACTTTGTTAGTTCGCAGTTCTGACAAAGGATTAAATTCAGAAGCTGATGGCTTTGTCCCATATATGGGAAAACGGACAGTTCTTTCCTGGTTGATTGACTCTGGATCAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCCTGCTGGAGGGGTGGATCACAAGAGATGGTATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCTTATCAAAACATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCTGTTGATATTGATGGAGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCGTCAACATTTCATCAGAGATGCTTGGATATACAGATGCTTCCTCCCGGTGAATGGCATTGTCCGAATTGTACCTGTAAATTTTGTGGCATAGCCAGTGGAACTTCTGACAAAGATGAAGCAACTGTGTATGTCCTACGTACTTGCAACTTATGCGAGAAGAAATATCATGACTCTTGCACTAAGGAGATTGATACCCTTCCTGATAACTTTAATACATCAAGCCTTTCTTTTTGTGGGAAAGAATGCAAAGAGCTGTCTGAACACTTGAAGAAATACCTTGGTGCTAAGCATGAACTAGAAGCGGGTTTTTCTTGGTCTCTCATTCATAGAACAGATGATGACTCAGAAGCTGCTTGCAGGGGAATTACCCACAGGGTAGAATGCAATTCCAAGCTGGCTATTGCACTGACAGTGATGGATGAATGCTTTTTACCTGTTATTGATCGAAGGAGTGGGATCAATTTAATCCGTAATGTTTTATATAATTGTGGGTCAAACTTTAGTCGGTTGAGTTATAGTGGCTTTTACACAGCTATTTTGGAGAGAGGGGATGAAATTGTCGCAGCAGCATCTATCAGGTTCCATGGAACTATGATAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCGCCAAGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGGCCCTTTGCTCTCTGAAGGTTGAAAAGCTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACGACAATTTTTGGCTTCACACATCTAGACGAATCACTCAGACAAGAAATGAAGTCACTGAATATGATGGCCTTCCCTGGTATAGATATGCTACAGAAGGCTATAGTGGAACAAAGAAAACATGAGGGTTCTGAGAAAATGGAAAATGGAGGTAATGATTTGACCAAAACGGGAAATAGGTCTGATTTGGGTTCTTCAACTCCGCAAGATCCTCATGGAAGTGATGATGTTAGTTCAAATCCTACCAATGAGTCGAATGATGAATGTAGCTATGCTTCTCAAGAACTAAACAACCATGTTTTGGTCGATGGGACTCTCCGTTCCAAATCTTATTCTGAGGAAATGGTGTCTGATTCAGTTTCAGATAAATGTGTTTCTCCTTCTAGAACAAGTCATAGTGCAGTGCAAATGAAAAATGAAGAATTGACTGCTTCTCCTGTTGATAAATTAAATCCTTCTTCCAAAAGTCAATCCATTTCTCTGAATGGCACTTCTGTGAGTCGTCACCCATTAGATATTCGGAGAGCTCAAACTTTGGTTCAGGAAACTGCTTGTTCTGAACGGTGTCCCGCAGAAAACCTTGACAAGAAATGTCACTCATCCACTGCTATGAATTGTGATTCATTGGAGCTTGACATTAATCCAGTGTTGGATTCTGAAATGGCAGACAATACTACGCCTTCTAAAGAGGTTTATATGAATGACGCTCTTGAAACAGTTCCTTCAGGGAATTTATCTGGAGAGAATATTGCAAAGGGGAATAATGAAAATGAGTTGCTTCAAATGAAATGGATCTTGATGAAAGTGGCCTAA 3840 0.4172 MESGVRSSGSGVLVESRNSSGCLIVRKKGDGLGATASTSRKLYESKKRANINVSLSDSGSSDELMMPPGRRVGPETIRVCNGLAASERGSSEISRKRNRVELIRGSGEGIASERGLEQRDRKLTKLDVYDFDEYDGMDMENMRRRHLDGNGVGHGGGKFMGSVHASRIGVDREFKTGSSGRVLDKRKDSHYDRPSGLYPGDNVDHSRLKMNRDMARLPLPSQREKLNSDGSIRVQGKNGVLKVMVNKNKVGVSSEHYDHRKPVESRESRQRLKSEENATRWMSEENATRWMSEENASRWKSEENAKKLKTEETAKKNVPICSSSYLEAKPVEKPRLLKRLEKKRIASRKSLSSKDSKGDEGDSDNSDTSLNLGIKNTEAHKPGKKIISDDEQTPGHEKLPTTKVKEGKIKRGSGTEKQKLRERIREMLLSSGWTIDYRPRRNRDYLDAVYINPSGTAYWSIIKAYDALQKQLNDDANEAMRKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKKRYDSESDNKREPQLRRSSTNKHEMNSTDSDSDREKLSSFIKHGSKSIKNKMFENTTISARSKIPNANHHSSDGIEKSSFGCDPYIHGRKSKKHGRCTLLVRSSDKGLNSEADGFVPYMGKRTVLSWLIDSGSVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNRQEHSEKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQRCLDIQMLPPGEWHCPNCTCKFCGIASGTSDKDEATVYVLRTCNLCEKKYHDSCTKEIDTLPDNFNTSSLSFCGKECKELSEHLKKYLGAKHELEAGFSWSLIHRTDDDSEAACRGITHRVECNSKLAIALTVMDECFLPVIDRRSGINLIRNVLYNCGSNFSRLSYSGFYTAILERGDEIVAAASIRFHGTMIAEMPFIGTRHIYRRQGMCRRLFSAIESALCSLKVEKLVIPAIAELTHTWTTIFGFTHLDESLRQEMKSLNMMAFPGIDMLQKAIVEQRKHEGSEKMENGGNDLTKTGNRSDLGSSTPQDPHGSDDVSSNPTNESNDECSYASQELNNHVLVDGTLRSKSYSEEMVSDSVSDKCVSPSRTSHSAVQMKNEELTASPVDKLNPSSKSQSISLNGTSVSRHPLDIRRAQTLVQETACSERCPAENLDKKCHSSTAMNCDSLELDINPVLDSEMADNTTPSKEVYMNDALETVPSGNLSGENIAKGNNENELLQMKWILMKVA 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01981 1279 ProSitePatterns Zinc finger PHD-type signature. 745 784 IPR019786 -
Cca06g01981 1279 ProSiteProfiles Zinc finger PHD-type profile. 742 787 IPR019787 -
Cca06g01981 1279 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 931 1001 IPR016181 -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 252 282 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 251 312 - -
Cca06g01981 1279 CDD PHD2_CHD_II 745 784 - -
Cca06g01981 1279 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1217 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 182 205 - -
Cca06g01981 1279 Coils Coil 497 524 - -
Cca06g01981 1279 SMART PHD_3 744 785 IPR001965 -
Cca06g01981 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 865 IPR013083 -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 378 418 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 499 552 - -
Cca06g01981 1279 SUPERFAMILY FYVE/PHD zinc finger 734 790 IPR011011 -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 295 312 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 1048 1100 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 339 418 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 1059 1100 - -
Cca06g01981 1279 CDD NAT_SF 940 999 - -
Cca06g01981 1279 Coils Coil 462 482 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 53 75 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 1126 1173 - -
Cca06g01981 1279 Pfam PHD-finger 745 787 IPR019787 -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 513 552 - -
Cca06g01981 1279 MobiDBLite consensus disorder prediction 346 364 - -
Cca06g01981 1279 Pfam Tify domain binding domain 667 717 IPR032308 -
Cca06g01981 1279 PANTHER PHD FINGER FAMILY PROTEIN 1 1217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01981 Cca-Chr6 35000009 35007210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01981 1 1077 PHD Transcription Factor Family AT4G14920 48.051 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca06g01981 TDBD 6.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01981 - - ccaj:109804483 2102.41