Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01971 atggccgtcgggaagaacaagaggatttctaagggcaaaaagggtggcaagaagaaggcTGCTGATCCCTTTGCCAAAAAGGATTGGTATGATATCAAGGCCCCTTCCGTGTTCCAGGTCAAGAATGTTGGCAAAACCCTTGTCTCACGTACCCAGGGAACCAAGATTGCTTCTGAAGGACTCAAACATCGGGTGTTTGAGGTCTCATTGGCTGATCTTCAAGGGGATGAGGACCATGCCTTCAAGAAGATCCGTTTGAGAGCTGAGGATGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGGGGATGGATTTCACAACTGACAAGTTGAGGTCATTGGTACGAAAATGGCAAACATTGATCGAGGCTCATGTGGATGTTAAGACTACTGATAATTATACTTTGAGGATGTTCTGCATTGGCTTTACTAAGAGGCGTAGTAACCAGGTCAAGAGGACCTGTTATGCACAATCAAGCCAAATCCGACAGATTCGCAGGAAAATGAGAGAGATAATGGTCAACCAGGCAACATCATGTGATTTGAAAGAATTGGTCCGCAAGTTCATCCCTGAAATGATTGGAAAAGAGATTGAAAAGGCAACCTCTAGCATCTATCCTCTGCAGAACGTGTTCATTCGCAAAGTTAAGATCCTGAAAGCGCCTAAGTTTGATCTTGGGAAACTGATGGAGGTTCACGGGGATTACTCAGAAGATGTTGGAACTAAGGTGGATAGACCCGCTGATGAAACAATGGTTGAGGGAGCTACTGAAGTAGTTGGAGCTTAA 786 0.4109 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETMVEGATEVVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01971 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Cca06g01971 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Cca06g01971 261 MobiDBLite consensus disorder prediction 1 20 - -
Cca06g01971 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Cca06g01971 261 MobiDBLite consensus disorder prediction 1 15 - -
Cca06g01971 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Cca06g01971 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Cca06g01971 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01971 Cca-Chr6 34893976 34895923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01971 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 86.641 5.47e-165 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01971 K02984 - gmx:100805519 473.781