Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01970 ATGGAGAAAGAAGAGAGCGTTGATTTGAGTAAAATATCTCTTCGACCCCTTGAGCTCTCTGACCTCGATGATCTCATGGTGTGGACCAGTGACGAAAAAGTTGCCACCTTCTGCACTTGGGATCCTTACACGAGCAAAGACGATGGCATCAACTTCATCCAAAACATAGCAACAAAGTTTGTGTGGTGCAGAGCAATATGCCTCAACGACCGTGCTATTGGCTGTGTTTCTCTGTCCTCCAACTCAGAGTATGACAAAAGTAGAAAAACATCAGCGGAACTAGGCTACGTTTTGGGCTCCAAATACTGGGGCAAAGGGATTGCCACGCTGGTTGTGAAACAAGTGGTGAAGATTGCTTTCACTGAGTTGGAACACTTGGAGAGGGTTGAAGCTCTTGTTGATGTGTTCAATGTTGGCTCTCAAAGGGTGTTGGAGAAGGCTGGTTTCCAAAGAGAGGGGCTTCTTAGGAAGTATGTGTTTCTCAAAGGAAAAGCCAGAGATATAGTCATGTTCAGTGTTCTTTCTACTGATCCTCACCTTTGA 543 0.453 MEKEESVDLSKISLRPLELSDLDDLMVWTSDEKVATFCTWDPYTSKDDGINFIQNIATKFVWCRAICLNDRAIGCVSLSSNSEYDKSRKTSAELGYVLGSKYWGKGIATLVVKQVVKIAFTELEHLERVEALVDVFNVGSQRVLEKAGFQREGLLRKYVFLKGKARDIVMFSVLSTDPHL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01970 180 PANTHER ACETYLTRANSFERASE (GNAT) DOMAIN PROTEIN 7 178 - -
Cca06g01970 180 Gene3D - 1 174 - -
Cca06g01970 180 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 12 167 IPR000182 GO:0016407
Cca06g01970 180 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 11 174 IPR016181 -
Cca06g01970 180 Pfam Acetyltransferase (GNAT) domain 12 150 IPR000182 GO:0016407
Cca06g01970 180 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 7 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01970 Cca-Chr6 34892212 34893124 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Cca06g01970 Acetyltransf_3 1.1e-27 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01970 - - ccaj:109810875 360.918