Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01968 ATGGACACGCCAGAGAGGAACCAGATCAGTGCTACCCTCTCTAAGTTTGAGGATTCACCTGTTTTCAACTATATCAATAGTTTGTCTCCTATAAAGCCAGTTAAATCTGTTCCCATTAGTCAAACTTTCAATTCACTGAGCTTTTCATCCCCTCCATCGGTTTTCACGTCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTCCTCCGAAGACATAACCCGTTGGGCACATCAAAGCCTAAGGTTTCTTCTGAAGATGTAAATAAAGTTCACTCAAGTGAAGAGACTCTTGCAGATTCTACACCTGAACATCATAATAACTCAAGTGGATTGCAGGAAAACGGTGATAAAGGGATTTCAGTAAGAGATGCTCCAATTGAGATATCTAGTGAACACATAAAATTCTCAGTTGAGCTATCGCAAGATTTAAAGTATAATTGTGGTAGCCCTGGCTATGCCCCTCCACTTTGTGGTGATGAGGCCAACTCTCTTTTGGAATTGCCTGGTGTTCAGGAAGGTTGCAAAACAGATTCAGTTGAGGGTGAAGTGCATATTCAGGAAATGTGTCAGATGGAGCCAAAGAGTGAAGGTCCAGAGTGTTATTGGGATGGTTTGATTCCTGATGCTCCTGATATGCTCATCTTTAGTCCCCCAGGTGAAGCAGAAGCTTTTAAGGGTCTAATGCACAAACCGTTGAACGATATTATGTCTATGCTACCGCATTCTACCATGCACAATGGTAGGAAAATGCACATTGTTGATTCGGTTGCTTCTGGTTCTGAACATGAAATTGAGCCAATAACAGCCACAGCCACAGACGAAATACAGAATAATCTTGCCAATGTTGCTTTGGTGACTAGCAATCCAAATGAGAAAGCAAACGACCAGCTTGTTTCTGTCACACACCGTGCCATACGAAGGCGCTGTCTAGACTTTGAGATGGCCAATGTGCAAAGGAAGAACTCTGATGATAATTCAAACACCGGTTCTAGTACATCTGAGTCTGATGGAAGGAATGTTGCTAATGAAAAGCAACTTCTTCCAACGAAACGCAGTGGGAATTTACAAAAGGGAAATTTGCCAGGAATTGGTCTACACTTGAATGCAATTGCTGCCTTAAAAGATTACAAGGGCATACAAATTGAAAAATTGTCTTCCGGAAGACAACTCAATCTTCCCAACTCCACTTCTTTGCAAATCTCTACAAGCCAGGAACATCAGCATCTAGCATTGGTACCTTTATCATCCGAAGGAGACTTGGACTTGGATCCATTAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGCCATTAGCTTACATGGCTAGTGAAGACTTCAATCAGAATAGCCCCAGAAAGAAAAGGCGTAAGCTGGAGACACCTGGAGAAACTGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCGCCTGTCAGGATTGCTTCAACAAACCTATCCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCGCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCTGACACTGTACCTGAAATTGGGGATGACCCTAACAAAACACCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGGTGCAAGAACGCTTTCGGTAGAAAGGATGGTTCTGTTCCTGTAGGCTTAGAAACCGAGACAGAAGAAGCAGAAGCATCTGACAAGGGTCTGGCAGAAAAAGCATTACAGAAAACTGAAGATCATCATGATTCTGCTACTGTGTCAACACCATTACGGCTTTCCAGGCCAATGCTTCCATTGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATATCTGGCTCTGCATTATTTGCCTGCCAAAAGCTTGGGAAATCAAATTCTCTTTGGTCTCAAGAAGCTAGTAAGCATTTTCAAACTGTCCCCGATGATGAAATGCCAGATATTCTCCGAGGTGATAGCTCTCCTATCGCATGCTCTCCTATCACATGCATCAAAACATCTTCTCCAAATGGCAAGAGAATCTCCTCTCCTAACTGTGACATGGGATCGTCTCCTAGTCGCAGAGGTGGCAGAAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2280 0.4329 MDTPERNQISATLSKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHNPLGTSKPKVSSEDVNKVHSSEETLADSTPEHHNNSSGLQENGDKGISVRDAPIEISSEHIKFSVELSQDLKYNCGSPGYAPPLCGDEANSLLELPGVQEGCKTDSVEGEVHIQEMCQMEPKSEGPECYWDGLIPDAPDMLIFSPPGEAEAFKGLMHKPLNDIMSMLPHSTMHNGRKMHIVDSVASGSEHEIEPITATATDEIQNNLANVALVTSNPNEKANDQLVSVTHRAIRRRCLDFEMANVQRKNSDDNSNTGSSTSESDGRNVANEKQLLPTKRSGNLQKGNLPGIGLHLNAIAALKDYKGIQIEKLSSGRQLNLPNSTSLQISTSQEHQHLALVPLSSEGDLDLDPLDNGVQPAEDCSQPLAYMASEDFNQNSPRKKRRKLETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSSDTVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSVPVGLETETEEAEASDKGLAEKALQKTEDHHDSATVSTPLRLSRPMLPLPFSSKGKPPRSFVTTISGSALFACQKLGKSNSLWSQEASKHFQTVPDDEMPDILRGDSSPIACSPITCIKTSSPNGKRISSPNCDMGSSPSRRGGRKLILQSIPSFPSLTPHP 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01968 759 MobiDBLite consensus disorder prediction 319 356 - -
Cca06g01968 759 ProSiteProfiles CRC domain profile. 467 592 IPR005172 -
Cca06g01968 759 SMART CXC_2 466 507 IPR033467 -
Cca06g01968 759 SMART CXC_2 552 593 IPR033467 -
Cca06g01968 759 MobiDBLite consensus disorder prediction 316 358 - -
Cca06g01968 759 MobiDBLite consensus disorder prediction 719 759 - -
Cca06g01968 759 MobiDBLite consensus disorder prediction 73 118 - -
Cca06g01968 759 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 555 590 IPR005172 -
Cca06g01968 759 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 469 504 IPR005172 -
Cca06g01968 759 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 758 IPR044522 GO:0003700
Cca06g01968 759 MobiDBLite consensus disorder prediction 84 101 - -
Cca06g01968 759 MobiDBLite consensus disorder prediction 719 734 - -
Cca06g01968 759 MobiDBLite consensus disorder prediction 446 466 - -
Cca06g01968 759 MobiDBLite consensus disorder prediction 449 466 - -
Cca06g01968 759 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01968 Cca-Chr6 34864189 34869108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01968 16 758 CPP Transcription Factor Family AT4G14770 44.343 3.52e-158 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Cca06g01968 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01968 - - gmx:100804447 1275.77