Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01966 ATGGATTCGGAAGGTGAGGGTGGTAGGACACCAAAGATTTTATTGGAAGCAGAAGGGGCTCTGCATAAGATGAAGGGTGCTGGAAACATGAGCAGCAAAGACATGATTTTCAGAGCTGATAAGATTGATCTCAAGAGTTTGGATGCCCAACTGGAAAAGCACTTGAGCAGGGTTTGGTCGAGGAGTGCTGAGTTGAAACGCCCCAAAGAAGAGTGGGAGGTTGATTTGGCCAAATTGGATTTACGATATGCTGTGGCTCATGGGGCCTATGGTACTGTATACAGGGGCACATATGATACTCTAGACGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGCCGCTGCTTTACGTGCATCGTTTAGGCAGGAGGTTGCTGTCTGGCAGAAACTTGACCATCCAAATGTGACAAAATTTGTTGGAGCTTCAATGGGTACTTCAAATCTTAAGATTCCCTCTAAAAACCCTTCAAATCCGGCTGAAGAGTCCCTTCCTTCCAAGGCATGCTGTGTTATTGTGGAGTTTGTCTCTGGTGGGACACTAAAGCAATATTTGATTAAAAGTAGGAGGAGGAAACTTGCTTATAAGATTGTGATTCAGCTGGCTTTGGACCTTGCTAGGGGTCTTAGTTATCTACATTCGAAGAAGATCGTTCATCGTGATGTTAAAACAGAGAATATGTTACTAGATAATAGTCGGAATCTAAAAATAGCTGATTTTGGAGTTGCTCGGGTTGAGGCTATGAATCCAAGTGACATGACAGGTGAAACTGGAACCCTTGGATATATGGCCCCAGAGGTTCTGGATGGTAAGCCTTACAACAGGAGATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTACTGCTGTGATATGCCTTATCCAGATCTAAGCTTTGCTGATGTGTCATCTGCGGTTGTTCGCCAGAATTTACGACCAGACATTCCTCGGTGTTGTCCAAGCGCCTTAGCGAACATCATGAGGAAATGCTGGGACGCGAATCCAAACAAGCGTCCAGAAATGGAAGATGTGGTGAGAATGCTGGAAGCACTTGATACAAGCAAAGGTGGTGGAATGATACCTGAAGATCAGAACTCAGGTTGCTTTTGTTTTGCTCCAACCCGTGGTCCTTGA 1140 0.45 MDSEGEGGRTPKILLEAEGALHKMKGAGNMSSKDMIFRADKIDLKSLDAQLEKHLSRVWSRSAELKRPKEEWEVDLAKLDLRYAVAHGAYGTVYRGTYDTLDVAVKVLDWGEDAAALRASFRQEVAVWQKLDHPNVTKFVGASMGTSNLKIPSKNPSNPAEESLPSKACCVIVEFVSGGTLKQYLIKSRRRKLAYKIVIQLALDLARGLSYLHSKKIVHRDVKTENMLLDNSRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPRCCPSALANIMRKCWDANPNKRPEMEDVVRMLEALDTSKGGGMIPEDQNSGCFCFAPTRGP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01966 379 Gene3D Phosphorylase Kinase; domain 1 68 153 - -
Cca06g01966 379 Gene3D Transferase(Phosphotransferase) domain 1 178 365 - -
Cca06g01966 379 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 22 372 - -
Cca06g01966 379 PRINTS Tyrosine kinase catalytic domain signature 211 229 IPR001245 GO:0004672|GO:0006468
Cca06g01966 379 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672|GO:0006468
Cca06g01966 379 PRINTS Tyrosine kinase catalytic domain signature 321 343 IPR001245 GO:0004672|GO:0006468
Cca06g01966 379 PRINTS Tyrosine kinase catalytic domain signature 173 186 IPR001245 GO:0004672|GO:0006468
Cca06g01966 379 Pfam Protein tyrosine and serine/threonine kinase 82 350 IPR001245 GO:0004672|GO:0006468
Cca06g01966 379 ProSiteProfiles Protein kinase domain profile. 79 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01966 379 CDD STKc_MAP3K-like 85 350 - -
Cca06g01966 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Cca06g01966 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 372 - -
Cca06g01966 379 SUPERFAMILY Protein kinase-like (PK-like) 61 350 IPR011009 -
Cca06g01966 379 SMART serkin_6 79 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01966 Cca-Chr6 34847931 34851075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01966 1 379 MAP Kinase Kinase Kinase AT3G22750 74.677 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca06g01966 PK_Tyr_Ser-Thr 8.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01966 - - gmx:100803917 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02358 02 44414924 44416747 Cca06g01966 06 34847931 34851075 PCT