Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01949 ATGATTCAGTTTCAGAACACTGATATGAGACTTGAATCGGGAACTTGCAATGTGTGCTCGGCTCCTTGTTCATCTTGCATGCATCTTAACCATGCTCTCATGGGGCCAAAGGCTGAAGAGTTTTCTGATGAAAACTGTCGCGTAGGAGAGGCTAATAACCAGTATTCTATGGAAGAGGATAATGCATATTCTCTTAGGAGCAGAGCTTGTGAAAGCTCGCAGCACACTGTCAGTGAAGCAAGTAATATGCAGAGTGTTAATTCAAGTCATGATGCTTTGTCCGAAAATGCCGAGAGTAGACAAATTACATTGAATAAGTATCAAGATCCCAAGTATTTAGAAGGTCATGATGACAACACTTCTTGTATTAGTAGAGCCAGTGATGCTAATTTTGTGAATGGCAGCCATCAGAGGAAGGAAGAGAAAATAATAATGCATGTGGAAAGGGATTCATCTTCTCATGTTCCAGAAAAATTGTTGGAATGCTCCATTGAGAATTCTAGTTCATCCTTGACCAAAGAGAGGGAACCTGTTGTTTCTGGTGAGAAACATATTGCTGTTAAGGATCGCCTTGTTGAGAGTACTTCCGAGATTTCACTAAAAGTATGTCCAAAGTCAGAAGCAGATACCGCTGTTTGTGATGTTAACAATGAAGATCCTAAATGTTCACTTCACAATGGACAAGGTGAGAAAACGGAGCTGGTTAAATTGCCTGGCAAGCAGGAACCTCAATCTGAAGACGAGAGTGATGAATCAGATGTTGTGGAACATGATGTAAAGGTGTGTGACATCTGTGGAGATGCTGGTCGTGAGGATCTACTTGCCATATGTAGTAGGTGCAGTGACGGTGCAGAGCACACCTACTGTATGCGAGACATGCTTGAGAAAGTCCCTGAAGGGGATTGGTTATGTGAAGAATGCAAAGATGCAGAGGAGAATGAAAATAAAAGATCGGATGTTGAAGACCAAAAAATGGTTGAAGCTGGTTCAACCTCACAAGTTTCTGGCAAAAGGCTTTCTGATAACATTGAAGTAGCTCCAGCAGCAAAAAGACAAGCTCTTGAATCAAGTACAGGATCACCAAAGATGTCAAGTCCCAAGAAGTTAGTTCCATTATCCCGTGAATCTTCATTTAAGAGCTTGGATAAATCAAAAGTGAAGCCTAGTCTTCTGATGCCTATTCGAAACCACTCTGGTGGTAATGACACAGAGATTGCTCGCTCTCCTTCGATTGGTCCCCGGGGTCAAAATCCTAAGGGTATGTTGTTGAAGTCTAATTCATTCAACAACTTGAATTCCAAGCCAAGAGTTAAACTTGTTGAAGAAGTTGTTCCCCCAAAACCAAAAGGGGGTAATGAACATACTTCAAAGAACATGGACATGCCTGCTCGAATGACTGGCAAATCAACATTATTCAAATCCTCGAGTTTGGGGCGATCAAATGCATCTGAATCAAAAGTTAAAATGCTTTCGCCCAAGTCTGCAACTACTCAGGATTTGAAAGGTTCTAGACATTCAAAAGAATCAGGTGTGTTTGATAGGAAATTTCCGTCTAGGGTTGATCGTCCCGTGGCTAGTACTGTCGTTTCCACTCCTAAGGGTGATCAAAAGCTTACACCTCGTGCTGAAACCAGTAAACCCTCAACAATGAACAACAATCGAGAATTGAAGGTTAACCAAGATGGAAAATCAAGTACATTATCAAGGTCAATGAGTAATATAAGTCGTAAAAGTTTGGAGCCTCAAGTTAGTTCAGAGAGAACATCAACCCGGGTTGATGAAGCTCAACAGGATGTGCTGCCTCGATCACGGGAGACTGCAAATCAGGTTGAGAAAAGCAGAGATAGTTCTAGTGGTGATCGTGTAAGGTCACCTGTTCCAACTTCTTCAAAAAACCCATTCTGTCAAAAGTGTAAGGAATTTGGCCATCCCTTGGAATGTTGCACAGCTGGTACTACACAGGAATCTGGTGCCGAAATATCTGTCACTGCCTCCAGTAGTTCAAAAGAGGAGATGCATAAAGACAATATATTGAAAGCTGCAATCCAGGCTGCTTTACTTAGAAGGCCTGAAATTTACAAGAAGAAAGAAGTGTCTAATCAAACTGATGAGGTCTCTACCTCAGGCACAGAGTTGAATTGTGAAGTGACTTCAAAAGACCAAGTGTTGATTTCTGGCACACTGAAGCATAGTATATCTGCTGATGAAGCCCATGAACAACTGGAAACCCTTGAGAATTCTACCTCAGATTCTTCAAAATGTTCATCTGCCAATGATTTGAAGCAACTTAACTCTTGTCCAACTGACTCTCAGTCCCTAACAGGAAAGTCAGATTCCATTGGTCTTGCAGCTGGAAAGCTTGTAGTGAGAGACTTGTCTGATAAAGCTGTGGCACTGTCAAGTGTTCCTTCGAAGACATTAGCCTTTCCTGAATATGAATACATCTGGCAGGGTGTCTTTGAAGTGCATAGAAATGGAAAGCCTCCTGATTTATATACTGGACTTCAGGCGCATTTATCATCTTGTGTTTCTTCTAAGGTTATTGGGGTAGTGGACAAGTTCCTACCCAAAGTTCCCCTCAATGAAGTTTCTCGACTGAGCATTTGGCCTTCACAGTTTCATCATGGTGGGGTTAGTGAAGATAATATTGCCCTTTACTTCTTTGCCAGGGATGTTGAAAGTTATGAGAGATACTACAAGGGTTTATTGGATCACATGATTAGAAATGATTTAGCACTTAAAGGAAATTATGATGGTGTTGAACTGCTGATATTCCCTTCCAATCAGCTTCCTGAAAATTCACAGCGCTGGAATATGTTGTTTTTCTTGTGGGGCGTATTTAGGGGGAGGAGGATCAATAATTCAGATTCTGCAAAAAAGATTTGTATTCCCAGTTTGAATGTGATGCCAGTTGAGGAGAAATCTTCAGCTGTTGTTTTGACGAAGCCTGAAACACATTGTTTGCCAAAGTGCAAGAAAGATGAAGAATCAATTGATTGTGATAAAGCATGTAATGCACTTCTCCCATCCACTTCTGTAGACCAACGTCAGACTAATGGAAGTAGGAATGTGGATGCCAATGACCAGACATATTTGGGTTCACAAGGAAACTTAGAGAAGCTAGATAGTAGGATTGACTCAAAATCTACATCAAGGGTTCTAACAAGCAGCACTCTGTTACATCAAGAAATTGAGTCTCCTGGTTCACCCCTGAAAGCTGGTGTACCTGAACAAGGACAGTGCAGAGAGTGTGAACCTCCTGAAGCAACAGGAAAAAGTGCAAGTAGTATGATTGTGGAAACAAAAACCGATTCGGATATTTCTGTTAAGCAAGAGAACACCTTGTCTTTGATTCCTTCTGAAGAAGGTGCTGCAAGCAATATTAGCGAGGATAAGATTTCAGAAAAAATAAACAGTGATAAAGACCAACAAAGGCCTGAGAAGAAACGAAAAGAGGATTGTCATTATATTGATTTAGAGGCAAATCTTGACAATCAAGAACCAGGTGCTACAAGCAATTTTAGTAAGGATAAAAATTCAATAACAGTTATTGGTCAAGATCAGCAAAGGCCTAAGAGGAAACCGAAAGATGATCATTATATTGATTTGGAGGTAACGCCTGAAGATCAAGAAATGGGTTCTGTAAGCAATATACGTGAGGATAAAAAAATGGACGTTGAGGAAGACTGGCGATGGCTTAAGAAGAAACAGAAAGATGGTCACTGCATTGACTTGGAGGCAACTTTTCCGGGAGACCCAAGTGTAGAAGTGGTCAACTGTCAGCTACCTGATGATAAAGTTCAATATGTAAATCTTTCTGACACAATTATGCAGGGTTCTGCTGTTAGTTGTCAAAGAATGCCTTGGAGTGAGGGAAATGCTATGTCAGAAGACAGAGAAAGTTATGGCAAGAGGCTAAAGTCAGGTTTTGGTGGATTTTATGGTTCTGGAGGTAGAGACTCTTTTAATGACAGTTTTACACCTCTTAGAAATGATCTTGGCTCCTGTTCTTCAGTTGAGGACAAAGGATGTGAGGAAGCTTGTGCTGAAAAAATCATCCTTGAGGACTTAGGTACGAAGGAAAGAACCTTCTTTCCGGTTGGCATGCAGAATGCTAGCAACTCACTATCAGTGCTGAATACCATGTCAACCAAAGCGGTTGGTGGGTACGATGAAGGGTTTCAAGATGGGACTCCTAATCTAGAGCTTGCCTTAGGGGGCAAGACGAAACCGCCACAGTCTGCGCCTAAGGGTATGCTGCCTTTCTTAGTTGGGGCAGTGGACAGGCAGAATAACCGCCCGGTTAGCGTGGGAGATAGGCCGGAGGATGATGGTTTTGCTGCATCTCTTTCTCTCTCTCTGTCCTTTCCATCTCCAAACAAGGATCACACAAAAGCTGCTGAGCTTTTGCCTGATGGCCACCGAGTGAACAACCCGTTTTTCCTTTTTGGGAGAAAATAA 4461 0.4178 MIQFQNTDMRLESGTCNVCSAPCSSCMHLNHALMGPKAEEFSDENCRVGEANNQYSMEEDNAYSLRSRACESSQHTVSEASNMQSVNSSHDALSENAESRQITLNKYQDPKYLEGHDDNTSCISRASDANFVNGSHQRKEEKIIMHVERDSSSHVPEKLLECSIENSSSSLTKEREPVVSGEKHIAVKDRLVESTSEISLKVCPKSEADTAVCDVNNEDPKCSLHNGQGEKTELVKLPGKQEPQSEDESDESDVVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMRDMLEKVPEGDWLCEECKDAEENENKRSDVEDQKMVEAGSTSQVSGKRLSDNIEVAPAAKRQALESSTGSPKMSSPKKLVPLSRESSFKSLDKSKVKPSLLMPIRNHSGGNDTEIARSPSIGPRGQNPKGMLLKSNSFNNLNSKPRVKLVEEVVPPKPKGGNEHTSKNMDMPARMTGKSTLFKSSSLGRSNASESKVKMLSPKSATTQDLKGSRHSKESGVFDRKFPSRVDRPVASTVVSTPKGDQKLTPRAETSKPSTMNNNRELKVNQDGKSSTLSRSMSNISRKSLEPQVSSERTSTRVDEAQQDVLPRSRETANQVEKSRDSSSGDRVRSPVPTSSKNPFCQKCKEFGHPLECCTAGTTQESGAEISVTASSSSKEEMHKDNILKAAIQAALLRRPEIYKKKEVSNQTDEVSTSGTELNCEVTSKDQVLISGTLKHSISADEAHEQLETLENSTSDSSKCSSANDLKQLNSCPTDSQSLTGKSDSIGLAAGKLVVRDLSDKAVALSSVPSKTLAFPEYEYIWQGVFEVHRNGKPPDLYTGLQAHLSSCVSSKVIGVVDKFLPKVPLNEVSRLSIWPSQFHHGGVSEDNIALYFFARDVESYERYYKGLLDHMIRNDLALKGNYDGVELLIFPSNQLPENSQRWNMLFFLWGVFRGRRINNSDSAKKICIPSLNVMPVEEKSSAVVLTKPETHCLPKCKKDEESIDCDKACNALLPSTSVDQRQTNGSRNVDANDQTYLGSQGNLEKLDSRIDSKSTSRVLTSSTLLHQEIESPGSPLKAGVPEQGQCRECEPPEATGKSASSMIVETKTDSDISVKQENTLSLIPSEEGAASNISEDKISEKINSDKDQQRPEKKRKEDCHYIDLEANLDNQEPGATSNFSKDKNSITVIGQDQQRPKRKPKDDHYIDLEVTPEDQEMGSVSNIREDKKMDVEEDWRWLKKKQKDGHCIDLEATFPGDPSVEVVNCQLPDDKVQYVNLSDTIMQGSAVSCQRMPWSEGNAMSEDRESYGKRLKSGFGGFYGSGGRDSFNDSFTPLRNDLGSCSSVEDKGCEEACAEKIILEDLGTKERTFFPVGMQNASNSLSVLNTMSTKAVGGYDEGFQDGTPNLELALGGKTKPPQSAPKGMLPFLVGAVDRQNNRPVSVGDRPEDDGFAASLSLSLSFPSPNKDHTKAAELLPDGHRVNNPFFLFGRK 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01949 1486 SUPERFAMILY FYVE/PHD zinc finger 248 310 IPR011011 -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 1094 1123 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 591 619 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 311 631 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 744 772 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 500 520 - -
Cca06g01949 1486 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 9 1480 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 74 99 - -
Cca06g01949 1486 PANTHER - 9 1480 - -
Cca06g01949 1486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 333 IPR013083 -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 1013 1035 - -
Cca06g01949 1486 SMART PHD_3 261 308 IPR001965 -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 468 499 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 529 590 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 741 772 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 1058 1198 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 325 339 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 1133 1160 - -
Cca06g01949 1486 ProSiteProfiles Zinc finger PHD-type profile. 259 310 IPR019787 -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 420 434 - -
Cca06g01949 1486 MobiDBLite consensus disorder prediction 1165 1187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01949 Cca-Chr6 34727607 34737366 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00164 04 1517508 1527129 Cca06g01949 06 34727607 34737366 ECH
Cca06g01949 06 34727607 34737366 Cca06g01949 06 34727607 34737366 ECH