Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01945 ATGGGGGGTGGAGGAGGTGCAATTGGGGTGAGAGGTCTCAATGAAGAAGAAAATAAGTGGCCATCATGGCTTAAGCCACTTCTCCAAACAAGCTTCTTTGTTCAATGCCAAGTCCACTCAGATTCCCACAAAAGTGAATGCAATATGTATTGCTTGGACTGCATGAATGGAGCCCTTTGCTCTGCTTGTCTTGCTTCTCACAAAGAACACAGAGCCATTCAGATAAGAAGATCTTCATACCATGATGTGATAAGGGTGTCGGAGATACAAAAATTTCTGGATATAACAGGGGTCCAAACTTACATTATAAACAGTGCCAAGATTGTGTTCTTGAATGAAAGACCTCAACCTAGGCCTGGGAAAGGAGTTACTAACACCTGCCAAGTCTGTGAACGCAGCCTTCTTGATTCATTCAACTTCTGTTCCCTTGGTTGCAAGATAGTTGGAACCTCGAAGAAGTTCCCGAAGAAGAAAATGTTAGGTGAGAGAGATGGGTCCGATGGTGAAGAATCAATAAATGGCATAATGAATGAAAGTGCAAGAAACAAAATCCAGAGCTTCACACCGTCAACACCGCCACCAACAGTGGTAAATTACAGGACAGCTAAGAGGAGAAAGGGAGTCCCACATAGGGCTCCAATGGGGGGTGCCCTTATTATACAATACTAA 669 0.438 MGGGGGAIGVRGLNEEENKWPSWLKPLLQTSFFVQCQVHSDSHKSECNMYCLDCMNGALCSACLASHKEHRAIQIRRSSYHDVIRVSEIQKFLDITGVQTYIINSAKIVFLNERPQPRPGKGVTNTCQVCERSLLDSFNFCSLGCKIVGTSKKFPKKKMLGERDGSDGEESINGIMNESARNKIQSFTPSTPPPTVVNYRTAKRRKGVPHRAPMGGALIIQY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01945 222 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 12 217 - -
Cca06g01945 222 Pfam PLATZ transcription factor 76 147 IPR006734 -
Cca06g01945 222 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 12 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01945 Cca-Chr6 34707772 34710619 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca06g01945 PLATZ 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01945 - - gmx:100792668 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00173 04 1590755 1593006 Cca06g01945 06 34707772 34710619 ECH
Cca06g01945 06 34707772 34710619 Cca06g01945 06 34707772 34710619 ECH