Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01940 ATGATTGCCACGTGGAACCAACCCTTGCTGGTAGTTCAACACTTCAAAGTGATGATGAGAACACCAAGCAATGATGAAAGTGGTTTGAAGAAGGGACCTTGGAGCCCAGAAGAGGATAAAATATTGATGGATTTCATTCAGAAACATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAAAGTTGCAGACTAAGGTGGACTAATTACCTCAGGCCTGATATCAAAAGAGGAAAATTCTCTGATGAAGAAGAGAAACTCATCATCAATTTGCATGCAGTTCTTGGGAACAAGTGGGCAGCTATAGCATCTCATCTGCCGGGGAGAACTGACAATGAGATCAAGAATTTCTGGAACACCCATTTAAAGAAAAAGCTTTTGCAAATGGGGTTGGATCCAATGACTCACCGTCCAAGAACTGATCACCTAAGCCTTCTTAGCAATCTACAACAGATATTGGCTGCTGCAAAAATTGTGAGCAGTTTCACAAACCCTTGTGACATAAACAATGCTCTAAGGCTACAATCAGATGCCACACAACTAGCCAAACTCCAGTTATTGCAAAACATGTTTCAAGTCTCAAACTCAGACCCACTCAACCCTTTTGGATCACTAAACTCACTGCCAGATGCTTTGGTAAATGATGTTTTAGGGTTGAATAATCTCTCTAATCTTCAAAACCTTTATGATGGTACATCACTTGGTTTCTCTTCTCAAATCCAAGCCAATAATTTCCAAAACTTTGAGGCCCCTCAGGAGCCAACACAACACATGAATGGTGGCAGAAATAGTGGTTGCAAGGAATCTGAAAAGCTTGATGAGCAATTTGGTTCCACAACATCAAATTCTTCGCTTCCAAATCTAGTTTGTGCCTCACCTGAACGTTCAGCAGAAAAGATGGTAAACTCAAAGGAGTGTTCAACCAGCTTTGAGTTAACGTGGGGAGATTTAATGGATGAGGAACCAACCGAAACTTATTGGAAAGGTTTCATAGACCAACATTCTAACCAGGCATGGTCGACAGTCCCGTGA 1053 0.4188 MIATWNQPLLVVQHFKVMMRTPSNDESGLKKGPWSPEEDKILMDFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEKLIINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPMTHRPRTDHLSLLSNLQQILAAAKIVSSFTNPCDINNALRLQSDATQLAKLQLLQNMFQVSNSDPLNPFGSLNSLPDALVNDVLGLNNLSNLQNLYDGTSLGFSSQIQANNFQNFEAPQEPTQHMNGGRNSGCKESEKLDEQFGSTTSNSSLPNLVCASPERSAEKMVNSKECSTSFELTWGDLMDEEPTETYWKGFIDQHSNQAWSTVP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01940 350 PANTHER MYB TRANSCRIPTION FACTOR 19 341 - -
Cca06g01940 350 SMART sant 30 80 IPR001005 -
Cca06g01940 350 SMART sant 83 131 IPR001005 -
Cca06g01940 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Cca06g01940 350 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Cca06g01940 350 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Cca06g01940 350 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Cca06g01940 350 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Cca06g01940 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Cca06g01940 350 CDD SANT 86 129 IPR001005 -
Cca06g01940 350 Gene3D - 30 83 - -
Cca06g01940 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 19 341 - -
Cca06g01940 350 Gene3D - 86 133 - -
Cca06g01940 350 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Cca06g01940 350 CDD SANT 33 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01940 Cca-Chr6 34665056 34669458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01940 18 339 MYB Transcription Factor Family AT5G16770 47.324 2.72e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g01940 Myb_DNA-binding 4.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01940 K09422 - gmx:102660452 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01940 06 34665056 34669458 Cca06g01940 06 34665056 34669458 ECH