Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01936 ATGGAGGGAGCATCATGGAACAGTGTTTGCGTGGcaccgtttctgagcaaaacctacgacatggtcgatgacccttcgaccgactcggtggtttcgtggggcgaaaaaaacaacacctttgtcgtgtggaacgttccccaattcgccacagacattttgcccaaacatttcaagcacaacaacttctccagcttcgtcaggcagttgaatacttatGGTTTTAGAAAGGTTGACCCAGATCGTTGGGAATTTGCAAATGAAGGATTTTTAAGAGGTGAAAAACAACTTCTAAAAAGTATCAGTAGGCGGAAATCTACTCATGTAAATGGTAGTCAACAACCGTCTCAAGTTCACAAGTCATCTGTACAATCATGTGTTGAAGTGGGGAAATTTGGGCTTGAGGAAGAGGTGGAAATACTGAAAAGGGATAAGAACATTCTTATGCAGGAACTTGTTAGGTTGAGACAGAAACAGCTAGTGACAGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGTCAGCAGCAAATGATGTCATTTCTGGCAAAGGCCATGCATAGCCCAAGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAGAGTAATAGACATATCCCTGGGGTAAATAAAAAGAGGAGGCTCCACAGGCAAGAAGAAGATAGTTTAGCAACAAAGGATCTCCATGATTCTCTTGATGGACATATTGTCAAGTACCAGAGTTCCATAAATGAGGCTGCTAATGCATTATTTCGCCAGATATTGCAAATAAACAATTCTACAACAGCAGAATCTTCAATTAAGAACCCTGATGTTTTCCTTATTGATGATGTTCCTTCTTCCATTTCATTTGATAGCAGTAGTTCATCCACCCAGGTTTCTAATGTGACCCTTTCTATGGTTCCACCGGTTTCTGAGCTGACCTGTATGGAAGCAGAATCCCAGTTTCCTATAAATTGTATGCCCAGTAGCATGTCTGAGGTGCAATCCTCACCTGCTCTTATGGGTTTTTGTAATAGTCAAGGGATGGAGACAGAAAGCAGCTTAGTGAACCATGATCTGAGTGTTGGTGGGGCTGACACTAGGAACATGGGGGAGATAGATATGGTGTCAACTGTTTTAGATGATGTACATGCCGCAGAAGCTGATCATTTTTCACCTGATGCTGATGGATTATCTAAACTTCCCGGAATCAACGATGAATTCTGGGAACTGTTTTTCAGGCCAAGCCCAATTACAGGAGACACACAGGAAACTAAATGTAGCTCTCTAGGATGTGGTTTACCGGAAGATCAGGGTTTGCCTTCAGAAAGGGAAAATAAGCAGGAAAAAATTGATAAGATACAGCATGTTGACCATCTTACACAACAGATGGGACTTCTTACATCGGAGTCCTAA 1410 0.3638 MEGASWNSVCVAPFLSKTYDMVDDPSTDSVVSWGEKNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGEKQLLKSISRRKSTHVNGSQQPSQVHKSSVQSCVEVGKFGLEEEVEILKRDKNILMQELVRLRQKQLVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMHSPSFLAQFVQQQNESNRHIPGVNKKRRLHRQEEDSLATKDLHDSLDGHIVKYQSSINEAANALFRQILQINNSTTAESSIKNPDVFLIDDVPSSISFDSSSSSTQVSNVTLSMVPPVSELTCMEAESQFPINCMPSSMSEVQSSPALMGFCNSQGMETESSLVNHDLSVGGADTRNMGEIDMVSTVLDDVHAAEADHFSPDADGLSKLPGINDEFWELFFRPSPITGDTQETKCSSLGCGLPEDQGLPSERENKQEKIDKIQHVDHLTQQMGLLTSES 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01936 469 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01936 469 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01936 469 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01936 469 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 5 438 - -
Cca06g01936 469 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01936 469 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 438 IPR027725 -
Cca06g01936 469 SUPERFAMILY "Winged helix" DNA-binding domain 11 103 IPR036390 -
Cca06g01936 469 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01936 469 Coils Coil 130 157 - -
Cca06g01936 469 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01936 469 Gene3D - 7 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01936 Cca-Chr6 34630448 34634371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01936 11 469 HSF AT5G16820 52.878 4.33e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca06g01936 HSF_DNA-bind 1.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01936 K09419 - gmx:100793665 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01936 06 34630448 34634371 Cca06g01936 06 34630448 34634371 ECH
Cca06g01936 06 34630448 34634371 Cca02g02343 02 44244477 44246603 PCT