Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01933 ATGATAACCGTTGCTCCTTCAGAACTTGCTCCTCCTCCATCAACTGAACAGAAAAACAATGTCTGTGATTCCAAAACTACCCATATTTTTAAATCTAAATTACCAGATATACCCATCTCCAACCACCTACCTCTCCACGCTTACTGCTTTGAGAAACTCTCTGAATTCGCCGACCGCCCCTGCCTCATCGTCGGCGCCGCCGGCAAAATCTACACCTACGCCGAGACTCACCTCCTCTGCCGCAAAATCGCCGCCGGATTCTCCGCCCTCGGAATCCGCAAAGGCGACGTCGTCATGATCCTCCTCCAGAACTCCGCCGAGTTCGTCTTCTCCTTCCTCGCCGCCTCCATGATCGGCGCCGTCGCCACCACCGCCAACCCGTTCTACACCGCCGCCGAGATCTTCAAGCAGATTTCCGTCTCCAAGGCGAAACTCATCGTCACGCAGGCAATGTACGTCGACAAGCTCCGCCACCACGAGGACGCCGCGAAGCTCGGCGAGGACTTCAAGGTCGTGACGGTCGACGAGCCGCCGGAGAATTGCCTCCACTTCTCGGTGCTCTCGGAGGCGAACGAGAACGAGCTCCCGGAGACAGAGATCCAACCGGACGACGCGGTGGCGCTGCCGTTCTCCTCCGGCACGACCGGTTTGCCTAAGGGAGTGGTCCTGACGCACAAGAGTTTAACAACGAGCGTGGCGCAGCAAGTCGACGGAGAAAACCCTAACCTCTTCCTCGGCACCGAGGACGTGCTCCTCTGCGTGCTTCCGCTCTTTCACATCTTCTCTCTTAACAGCGTCTTGCTGTGCGCGCTCAGAGCTGGCAGCGCGGTTCTGCTTATGCAGAAGTTCGAGATCGCGACGCTGCTGGAGCTGATTCAGCGGCACCGCGTGACggtggcgatggtggtgccgccgctggtgctggcgctggCGAAGAATCCGATGGTGGCGGAGTTTGACCTGAGCTCCATACGGTTGGTGCTGTCGGGGGCTGCGCCCTTGGGCAAGGAACTCGAAGAGGCTCTCCGCAACAGAGTGCCTCAGGCTGTTTTGGGACAGGGTTACGGGATGACAGAAGCAGGACCGGTGCTGTCCATGTGCTTGGGATTTGCAAAGCAGCCATTCCCAACAAAGTCAGGCTCTTGCGGCACTGTAGTTAGGAATGCAGAGCTCAAGGTTGTTGAACCTGAAACTGGTCTTTCTCTTGGCTACAATCAACCCGGTGAAATTTGCATCCGAGGACAACAGATAATGAAAGGATATCTGAACGATGATAAAGCGACAGCATTGACCATCGATTCAGAGGGTTGGCTTCACACCGGTGATGTTGGCTATGTCGATGATGATGATGAGATTTTCATTGTTGACAGGGTCAAAGAACTCATCAAATATAAAGGCTTCCAGGTTCCTCCAGCAGAACTTGAAGGGCTTCTTATAAGCCATCCCTCCATCGCAGACGCAGCTGTTGTCCCACAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCTTTCGTTGTGAGATCAAACGGCTTTGATCTAACCGAAGAGGCTGTAAAAGAGTTTATAGCTAAACAGGTAGTGTTTTACAAAAGATTGCACAAAGTTTATTTTATTCATGCTATTCCCAAGTCTCCATCAGGAAAGATACTGAGGAAAGACTTGAGAGCAAAGCTAGAAAACGCAGCCACCCCGACGCCTTAA 1701 0.5203 MITVAPSELAPPPSTEQKNNVCDSKTTHIFKSKLPDIPISNHLPLHAYCFEKLSEFADRPCLIVGAAGKIYTYAETHLLCRKIAAGFSALGIRKGDVVMILLQNSAEFVFSFLAASMIGAVATTANPFYTAAEIFKQISVSKAKLIVTQAMYVDKLRHHEDAAKLGEDFKVVTVDEPPENCLHFSVLSEANENELPETEIQPDDAVALPFSSGTTGLPKGVVLTHKSLTTSVAQQVDGENPNLFLGTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIATLLELIQRHRVTVAMVVPPLVLALAKNPMVAEFDLSSIRLVLSGAAPLGKELEEALRNRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVEPETGLSLGYNQPGEICIRGQQIMKGYLNDDKATALTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLISHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRAKLENAATPTP 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01933 566 PANTHER 4-COUMARATE--COA LIGASE 3 28 557 - -
Cca06g01933 566 CDD 4CL 39 554 - -
Cca06g01933 566 Gene3D - 20 458 IPR042099 -
Cca06g01933 566 MobiDBLite consensus disorder prediction 1 21 - -
Cca06g01933 566 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 557 - -
Cca06g01933 566 SUPERFAMILY Acetyl-CoA synthetase-like 39 560 - -
Cca06g01933 566 Gene3D - 459 563 IPR045851 -
Cca06g01933 566 Pfam AMP-binding enzyme C-terminal domain 473 548 IPR025110 -
Cca06g01933 566 Pfam AMP-binding enzyme 53 464 IPR000873 -
Cca06g01933 566 ProSitePatterns Putative AMP-binding domain signature. 208 219 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01933 Cca-Chr6 34602833 34608016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01933 26 471 Monolignol Biosynthesis Gene Families AT1G65060 73.497 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01933 K01904 - gmx:547492 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01933 06 34602833 34608016 Cca06g01933 06 34602833 34608016 ECH