Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01931 atgggaacacaaccccaacaaacatttcgggaggaggaggaggaggagctgccgggccgtggaaccacgatctctggtcaatcaatgtcaactagcagaagtgttggctcaccatccagccgcagtgagcagacaatggcaacaccagctagtgataacactttccttaggttaaaccatcttgatatacatggtgatgatgctggatcacagggcgcagttgctagcaagaagaaaaagaggggccaacgtgctgttggaggtgataagagtggaagaggtctccgccagtttagtatgaaagTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATGGTGTTTCAACTCCTGATCAGCAACAATATGACGAGAAAAACATTCGTCGAAGGGTGTATGATGCCTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTAAGCGATATTGAAGAGCTTAAGACAGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAGCTGGAGGAGCAATATGTAGGTCTTCAGAAACTTATACAACGCAATGAGCAATTATATAGCTCAGGAAACGCTCCCAATGGAGGTGTGTCTTTGCCTTTCATTCTGGTGCAGACACGCCCCCATGCAACAGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGGTCTCAGAATGATAATGCAACAGACAATCCTACAGATGGCGGTGAAGGTTCTAGCATGTCAGGGTTGTACCATGCACAGGTTCCTACTTCAGTTTCAAACCCTCCAAATAGGACTCCTTCATCTCCACCCCTTCCTGGAATATTAAAGGCAAGAATTAAGAATGAGCATTGA 1029 0.2935 MGTQPQQTFREEEEEELPGRGTTISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKTERLGLRNRIEKKAAYLQELEEQYVGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNATDNPTDGGEGSSMSGLYHAQVPTSVSNPPNRTPSSPPLPGILKARIKNEH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01931 342 MobiDBLite consensus disorder prediction 21 55 - -
Cca06g01931 342 CDD DP_DD 178 281 IPR014889 -
Cca06g01931 342 PANTHER TRANSCRIPTION FACTOR DP 17 342 - -
Cca06g01931 342 PIRSF Txn_factor_DP 3 342 IPR015648 GO:0005667|GO:0051726
Cca06g01931 342 SMART DP_2 180 340 IPR014889 -
Cca06g01931 342 Gene3D Transcription factor DP 179 301 IPR038168 -
Cca06g01931 342 SUPERFAMILY E2F-DP heterodimerization region 180 295 IPR037241 -
Cca06g01931 342 MobiDBLite consensus disorder prediction 288 342 - -
Cca06g01931 342 Coils Coil 189 223 - -
Cca06g01931 342 Pfam Transcription factor DP 181 296 IPR014889 -
Cca06g01931 342 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Cca06g01931 342 MobiDBLite consensus disorder prediction 288 320 - -
Cca06g01931 342 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Cca06g01931 342 Gene3D - 85 178 IPR036388 -
Cca06g01931 342 PANTHER TRANSCRIPTION FACTOR DP 17 342 IPR015648 GO:0005667|GO:0051726
Cca06g01931 342 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Cca06g01931 342 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01931 Cca-Chr6 34588382 34593967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01931 91 289 E2F-DP Transcription Factor Family AT5G02470 55.500 1.05e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Cca06g01931 DP 2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01931 K04683 - gmx:100781272 589.726