Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01930 ATGGATCCTTTTGATGATGTTCTACCAGTGGCTCCTGCTGCACGTTCTCGGCCAGGTGCCAAGTTTGTTCCAAAAGCCAAATTGAAACAGCTGCCTCGAAAGGAAATACCGACATCAGAACATGCAACTTCGTCGAAAGATGGAATTTCTGGGAACGAATGTCAGAATGCAGTTGCTTCAACTGTAAGTATGCTAGCAGAAGAATCTATGGGATCCATTCATCATACACAGGTAGAAATTCCAAATTATTGTGAAACGGGAAATGCTAAACAAGTTGGTGTGAAAGGAGATAGTGCAGTCACAGTGGATGATTCTGCAACCACTATGTCTGAAGTTGATGCTGATCAGAATTCTACAAGCTTTTTAAAATCAGCTTATGGGGCAGAACTAGTAGATTTTGAGGTGGGCTCAGTAACTAACTTCGATCCTGAGACCAATGTCAATAATGGCACCGCACAACCAGTTCACCCTGATAATGCCCTAGATAGGATGAAAGAACCCCCTAAAAATGGGGAAGGTTCATTTTTTGACAGCAACAAAGGTTTGGAGCTTATTGATAATTCATTGCGAGTTAGTACGGATTTGGGCTTCAAAAGTGTTTCAGATAATAAAGCTGCCGAATTTGAATTGGATCCTTTTAGCAACATCCTCCCTGATCCTGGCGCTAGGAATGCTCATAAATTTCAGCCCAAGATTAAGTCACGACCTAGAGCATGCAATACGCCAGCAATTGCTTCTGCTTCATCTAATGTTATGACAGAAAAATCTGTTGAGTTGCCTACTTCTTGCAAGAATGACTTTCAATCTTTTCAGTCTAGTGGTGATGGCAGTGGTGGACTAAACCAATCAACTAGTTTACCTTTACCGGCCTCAGAGATTCTTAGAACAACTGATTTACCCAATAAGTTTGATTATATGAGCTCAAGCATTCCATTCTCTGAAGACAACAAGAGCTTGGAATCTGCAATTCCATCCCAACTGGATTCCCTAAATGCTATGCTTTCAGAGGATGCAGTTCATAATGGAACTAGAGATTGGCCTTCTAGCTATGGCAAATCATCAGGAGAGGCTGCAGACATTTTTTATGGGCTGGAATCCCTTGATGACTTTATCACCCATGCTGCCACTGATACAGGAAAACCAGCTCTTCATTCTTTCAATGAGAAGGGTGCAGAGGAAAATTTTGCCACACCTGCTAGTAATTCTATTAACTCTTTTGGGGAATGTGTTACTACCCAAGATACATTAACCTTCGATGAAGGTGCAGTTCCCAATGAGGATGATACTCACACTAACAATAGGTCGGAAACAGAGGAAGCTGTGGACTTGAATCCTGACTGCCCAGGTGATGATGTCTTTGATTATCACTCAATGAAATCTGACGAAGATCCAACTTCTGGAATTCCAGTACATGATGAGTTAACAAATGTTGCAGATAGTCCCAGATTGGCTGATCTTTTGCAAGCAGATGTTACAAGGGAAAAACAAGATTCCAATGAGAAAAAAAAGGATGACTCAACGCCATGTTCTGTAAGGAAGAATAGAAGATCTTCTATTGCTGGTGAGGAGGATAAAGGTGGTAAAACCTCAAGACAGCTGAGAAAACAAGCGGCTCGTAAGCCTGCAAACAGCTCATTGAATGAGGATGTTGAAGATAATGATGACCTTGACCCTCCTTATAATTCTAACGGAGATGAGCTTCAAGAAAATGATGATGACTATGAAGTTGATTATTCATCCAAGAAAAGAAGAGCATCAACAAGTTCAAAGAAGAAATCTGTAGCTAAAAGTGGAAAAACATCTCAAAAGCGTAAGAAGGCTAATGACGATTCAGAAAAAACTACGAAACCAAAAAAATTCTCTCGTTCAACCCGACGAAAAAAAAGATGCGTGGACAAGGCTCTGCTAGAAATTCCTGAGGATGAACTTGATCCTCGAACATTGCCTATTAAGGATATTATCTTACTTGCAGAACATAGGGAACGGCTGGCGAAAAAAGAGGCAATGACTTCAGGGGCATCTTCCACCTGTCAAAGTGGTGGAGATCCTTTTCATGAGGCCGGTGCTAATAATGAAGAGGAGTTCTCAGGTTCAGAAGATGATAGAGACCCATATGAGGATCAAGCAACTGAAGTGATTCCAACAGCTTCGACTTTATTCAACTACCAATCTTTCATGGAAAAGGCACCTAGGGGAAAATGGTCAAAACAAGACACTGGACTGTTTTATGAGGCTGTCAGGGAGTTGGGCACAGATTTTTCTATGATACAACAGCTTTTCCCTGGTAAAACACGCCATCAAATTAAGTTGAAGTACAAAAAGGAAGAAAGGGAGAATCCTTCACTGTTAACTGATGCTGTAAATAACCGTGCAAAAGATCACTCTCATTATAAATTGTTGATTGAGCGACTGCAAGATGCTTCCAACAAGGCAGAAGTAGATCCCAGTAGAGATGCCTCAGATTTCATGGCGGTGGATGAGGTTCTGGACCTAACACCCGCAACTAATAATGAGGAGGCTGCAGAGGTTGCAACAACTAAGCAGGAGGATGATGTTAAAGCACAGGAAGATTCGGTGGCAGTTCCTAGTCCAGAGCAATCTGATGATAGTGACGATGACTTTCAAAAATGGTCTCAGTATAAAAGTGTCTTTGATGAATAA 2661 0.4138 MDPFDDVLPVAPAARSRPGAKFVPKAKLKQLPRKEIPTSEHATSSKDGISGNECQNAVASTVSMLAEESMGSIHHTQVEIPNYCETGNAKQVGVKGDSAVTVDDSATTMSEVDADQNSTSFLKSAYGAELVDFEVGSVTNFDPETNVNNGTAQPVHPDNALDRMKEPPKNGEGSFFDSNKGLELIDNSLRVSTDLGFKSVSDNKAAEFELDPFSNILPDPGARNAHKFQPKIKSRPRACNTPAIASASSNVMTEKSVELPTSCKNDFQSFQSSGDGSGGLNQSTSLPLPASEILRTTDLPNKFDYMSSSIPFSEDNKSLESAIPSQLDSLNAMLSEDAVHNGTRDWPSSYGKSSGEAADIFYGLESLDDFITHAATDTGKPALHSFNEKGAEENFATPASNSINSFGECVTTQDTLTFDEGAVPNEDDTHTNNRSETEEAVDLNPDCPGDDVFDYHSMKSDEDPTSGIPVHDELTNVADSPRLADLLQADVTREKQDSNEKKKDDSTPCSVRKNRRSSIAGEEDKGGKTSRQLRKQAARKPANSSLNEDVEDNDDLDPPYNSNGDELQENDDDYEVDYSSKKRRASTSSKKKSVAKSGKTSQKRKKANDDSEKTTKPKKFSRSTRRKKRCVDKALLEIPEDELDPRTLPIKDIILLAEHRERLAKKEAMTSGASSTCQSGGDPFHEAGANNEEEFSGSEDDRDPYEDQATEVIPTASTLFNYQSFMEKAPRGKWSKQDTGLFYEAVRELGTDFSMIQQLFPGKTRHQIKLKYKKEERENPSLLTDAVNNRAKDHSHYKLLIERLQDASNKAEVDPSRDASDFMAVDEVLDLTPATNNEEAAEVATTKQEDDVKAQEDSVAVPSPEQSDDSDDDFQKWSQYKSVFDE 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01930 886 Gene3D - 734 798 - -
Cca06g01930 886 MobiDBLite consensus disorder prediction 268 291 - -
Cca06g01930 886 CDD SANT 733 774 IPR001005 -
Cca06g01930 886 ProSiteProfiles SANT domain profile. 733 780 IPR017884 -
Cca06g01930 886 SMART sant 730 778 IPR001005 -
Cca06g01930 886 MobiDBLite consensus disorder prediction 419 633 - -
Cca06g01930 886 MobiDBLite consensus disorder prediction 452 468 - -
Cca06g01930 886 MobiDBLite consensus disorder prediction 268 292 - -
Cca06g01930 886 MobiDBLite consensus disorder prediction 488 531 - -
Cca06g01930 886 MobiDBLite consensus disorder prediction 585 601 - -
Cca06g01930 886 MobiDBLite consensus disorder prediction 423 441 - -
Cca06g01930 886 SUPERFAMILY Homeodomain-like 732 779 IPR009057 -
Cca06g01930 886 MobiDBLite consensus disorder prediction 666 705 - -
Cca06g01930 886 Pfam Myb DNA-binding like 724 807 IPR039467 -
Cca06g01930 886 MobiDBLite consensus disorder prediction 1 53 - -
Cca06g01930 886 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 223 874 - -
Cca06g01930 886 MobiDBLite consensus disorder prediction 602 618 - -
Cca06g01930 886 PANTHER TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG 223 874 - -
Cca06g01930 886 MobiDBLite consensus disorder prediction 833 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01930 Cca-Chr6 34579920 34587610 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca06g01930 Myb_DNA-bind_7 2e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01930 K15198 - gmx:100792788 1164.44