Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01929 ATGACGACACCATCTTCCTCAGCTTCGGAATCGCAATACACTTATTCCAACCCCTCTTACTTCCCAGTGCCCTTTCATCTACAGCAACCTGCAACCACTCATTACGCTGCACCCTATGTTGCCACTCCGTCCGTGCAACCTCCCATCGTTGGTCCCGCTGCGCCTGTGGCGGGTGTATACTCCACCGTGCCACAGTATCAGGCACAACAGTTATTTGAGAGGGATGCACAGATAATAACGCCGGAGGCTCTTGAGAATGTTAAGGCAGCGATTGCGAGTAGTGATGTAGAGCACAAAGCAGATAGCAAAAGGAAAGCGGTTCCTCGCAAGGTTGCTGGCCAATCATGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTTTGTGGCGATCTCGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGGTTCCCTTCTTTTAACTTGGCACGAGTTGTCAGAGATAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCGAATCCTGCTGACCTTGCTGCTGCACTTAAAGAAATGAATGGTAAGTATGTTGGAAATCGGCCCATAAAACTTCGCAAGAGTAAGTGGAAGGAGAGGACGGATTATGAAGCACTGGAAAAACAGAAGAACCACATTCAAAAGAAACAGAAGCTGTCAAGGAAAGGTGTGCTGCACAAGTGA 714 0.4734 MTTPSSSASESQYTYSNPSYFPVPFHLQQPATTHYAAPYVATPSVQPPIVGPAAPVAGVYSTVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKADSKRKAVPRKVAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNHIQKKQKLSRKGVLHK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01929 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Cca06g01929 237 SMART rrm1_1 130 203 IPR000504 GO:0003723
Cca06g01929 237 MobiDBLite consensus disorder prediction 218 237 - -
Cca06g01929 237 SUPERFAMILY RNA-binding domain, RBD 111 209 IPR035979 GO:0003676
Cca06g01929 237 Gene3D - 75 228 IPR012677 -
Cca06g01929 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 201 IPR000504 GO:0003723
Cca06g01929 237 PANTHER RNA-BINDING PROTEIN 42-LIKE 25 237 - -
Cca06g01929 237 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 237 - -
Cca06g01929 237 CDD RRM_RBM42 123 205 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01929 Cca-Chr6 34576477 34579083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01929 131 229 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 1.08e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01929 K25079 - gmx:100807693 429.869