Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01926 ATGAGGCTCAAGACTTATGCGGGCCTTAGTTTGATTGCAACTTTGGCTATTATTTATCATGGATTTAACAGCAGGGGCCAGTTTTATCCGGCAATGGTGTATCTCTCGACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTCATTATGTGCATTTTATGGCAATTAACCAAGAAGGTGTTCTTGGGTTCCCTTCGTGAGGCAGAGGTTGAGAGGCTTAATGAGCAATCGTGGAGGGAGGTCATGGAAATCCTCTTTGCAATTACTATTTTTAGGCAGGACTTTTCTGTGACATTTCTTGCCATGGTAACAGCGTTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATCGAGACGACTCCTTCAGTGCCCATGTTGTCACATGTTCGAATTGTATCTTTCATGGGTTTCCTCCTTCTTCTAGATAGCCTTTTCTTATACAGTTCTTTGAAGCATTTGATAGAAACTTGGCAGGCTTCGGTTTCACTGTTCTTTTGTTTTGAGTACATGATACTGGCAACTACAACTGTGTCAATATTTGTAAAATATCTCTTCTACGTCAGTGACATGCTAATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTGATTAGGGACTTGCTTCACTTGTCTATGTACATGTGCTTCTTCCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTAATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTTCGTGTTGCAGATTACATACGATATCGTAAAATTACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAGGAGATGACTACCGCCAAGAAACTTATATGTGGGCATCTTTTTCACGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCATACTTGTCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACACCTGTAGCTGTAGGGCAGCAAGGATCACAGTCAGACAGTCATCGTCAGGGAACTGGGACAGGCACTGGAAGTGCAGCTCAAACTGAGGCTACTGATAATGTGAGTCGACATCAAGCCAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTGCAAATTCTTTTGTGTGCTCTCCTGGATACACTCTTTATCCCCCGGTTCAAATACCTACTGCAGAATCTGCTAGTACAGATCGTAGTGGAGAGCAAACTTCCAGTGAACAAGCATTAAGACAGTTTCTTATCCCTGGTGGACCAACAAATGTATCCTTTCCTATGATGCAACAATTCCATTTTCTACCTTCTCAAACATATGCAGCCCCTGTGAATTATGGAGAGGGGTTTGAGAATGATCCAAACATCCCAAGCTCTCCGCTGGAAGCTCAAAAAAAACTTCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTCGAGATTCTGCAGAGGACAAAGGCTGATAAAAGTGTAGATGAGGGTACATCCTCATCAGATAGCAGAGGCAAGAGTATCGCTTCCTCATCATCCGAATCTGGTAATGGTTATCGTGAGGTGATTCAAGATGGAAAAGCATGA 1653 0.4325 MRLKTYAGLSLIATLAIIYHGFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTPVAVGQQGSQSDSHRQGTGTGTGSAAQTEATDNVSRHQARLQAAAAAASIYEKSYVYPSANSFVCSPGYTLYPPVQIPTAESASTDRSGEQTSSEQALRQFLIPGGPTNVSFPMMQQFHFLPSQTYAAPVNYGEGFENDPNIPSSPLEAQKKLLQCQIQILQNQLEILQRTKADKSVDEGTSSSDSRGKSIASSSSESGNGYREVIQDGKA 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01926 550 PANTHER RING ZINC FINGER PROTEIN 1 435 - -
Cca06g01926 550 MobiDBLite consensus disorder prediction 339 371 - -
Cca06g01926 550 Pfam Ring finger domain 290 329 IPR001841 -
Cca06g01926 550 MobiDBLite consensus disorder prediction 522 541 - -
Cca06g01926 550 MobiDBLite consensus disorder prediction 341 371 - -
Cca06g01926 550 MobiDBLite consensus disorder prediction 509 550 - -
Cca06g01926 550 CDD RING-H2_synoviolin 288 329 - -
Cca06g01926 550 SMART ring_2 291 328 IPR001841 -
Cca06g01926 550 PANTHER - 1 435 - -
Cca06g01926 550 SUPERFAMILY RING/U-box 271 340 - -
Cca06g01926 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Cca06g01926 550 Coils Coil 490 517 - -
Cca06g01926 550 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01926 Cca-Chr6 34555748 34561648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01926 1 534 C3H Transcription Factor Family AT3G16090 64.684 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01926 K10601 - gmx:100816441 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01926 06 34555748 34561648 Cca06g01926 06 34555748 34561648 ECH