Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01915 ATGGATGAGGGAAAACATAGATCAAGGAAAGAAGATTATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCATCGGGATCGTGACCGTGATAGAACTAAGGATAAAAACGATGGGAGGCACAGGGATAGGGAGAAGAAGGATCGAGACTCCCGGAGACATGAGAGAGAGAGGAGTACCGATTCTGAAGACAGGCATGATAGGGACAGGGAGAAGCGCAGAGATAAAGATAAGGATAGGGCACATGTTCAGGATGTGgacagagaaagagttcgagacaagaaaagggaaagggatagggaagacagggaaagggagaggacagatagagtaagggagaaagaaagagagaaggaaagaaaagaggagaaggagaggatcagagagagagaacgagaaagggaaagggaaagggaaaagagggatcatgagagagagaaggaaaaggaaagagaaagggggaggagaacacgtgagagggagaAGCGCAGGGAAGTTGACAGTGATTACAGTGATGGTGAATCCAGGGAGAGAGATAGAAAGCGGCATAGGAAGGAGGATGGTGATTACAAGAAGAGAGAGAGGGAAAGGAGTGTTGGCAAGCAAAATAGGCAAACTGAGGAACGTGAAGGAAGCCCGAGAAAAAAGAGTGGCGGAGATGATTCAGATACAAAAGATGAAGAGAGAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAAGAGGTTGGATGAagaaatggaaaagagaaggaggagagttcaagagtggcaagagctaaggaggaagaaggaagaagcagaaagagaaaagCATGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACTCTTGAAGGGGAATCTGATGACGAAGAAGGTCCAGGTAATGGGAAGCATGATACAAGTATGGATGTAGATGAAGATGACAAGCCTGCTGATAAGGGACCTAAGGATGCAATGGTGGTAGACACTGATAATGGGACAGTTGCATCTGATTTACAGGATGGATCTGCTGGTGCTCCTGCAGATGAGGAAATAGATCCATTGGACGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAGAAGCTAAACAATGCTGTGACATCGTCACTTTCTGATAAAGCTGTTGACATAAAATCCAAAGATAAGGGGAATGAGCAAAGTCGTGGTGCACAGTCAAGGAAAGGTTCGAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGAGTCtgattatgcagatgatgaagttgagagggatccattggatgaagatgatgatgaATTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTTTAGTTGACCACTCAAAGATTGACTATGAACCATTCAAGAAAAACTTTTATATTGAAGTGAAGGAGATCTCTAAGATAACTTCTGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTATAAAATCGTGGCACCAGACTGGACTTGGTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGAAAAGCCGATGCCTATTCAAGCTCAAGCACTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGGATTGCTAAGACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCTCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCTAAGGTAATGGGTATCAGGTGCGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGCGGTGCTGAGATAGTTGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTTGTCATGGATGAGGCTGATCGGATGTTTGACATGGGTTTTGAACCTCAAATCACACGAATTGTTCAGAACATTCGTCCCGATCGTCAAACGGTTTTGTTCTCTGCTACTTTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACCCAGCTAGTTGAGGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTACGAGAAAGGAAAGATTTTGATATTTGTACACTCACAGGAGAAATGTGATAGTTTGTTCAAGGATTTGCTCAGGCATGGTTATCCATGCCTTTCACTTCACGGGGCTAAGGACCAGACTGATCGTGAATCCACAATATCTGATTTTAAGAGCAACGTTTGCAATTTATTGGTTGCAACAAGTGTTGCTGCCAGGGGATTAGATGTTAAGGAGCTTGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACCGGACGAGCCGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAACTGTCTGAGCAGATTGTTCCCAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAACCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGAAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCTGGAGGTGATATCTCACAGCATCCTGCTCTTGCTCAGATTCTCGCTGCCACTAAAGTGAATGCTCCTGCATTGCCTACTCCCATCTCCGCTGCTCAGTTGATGACAAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACTGCCACAGTCTTGCCTGGGACAGGGCTACCCCTTGCTGCAAATGATGGGGCCGCTCGAGCAGCATTAGCTGCTATAAACTTGCAGCACAACTTAGCAAAAATACAATCAGAAGCATTACCAGAGCATTATGAGGCCGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGATGGAAGGTTACACACAAGGAAACTTTAGGTCCTATTTCTGAATGGACTGGAGCTGCCATTACCACCAGGGGGCAGTTTTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTATTCATTGAAGGTCCTACTGAGCAGTCTGTTAAAAGAGCTAAAGCTGAATTGAAGCGTGTATTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAACTCAACCTGGCAAATACTCTGTCGTGTAA 3420 0.3968 MDEGKHRSRKEDYEVKDGDSKRSHRDRDRDRTKDKNDGRHRDREKKDRDSRRHERERSTDSEDRHDRDREKRRDKDKDRAHVQDVDRERVRDKKRERDREDRERERTDRVREKEREKERKEEKERIREREREREREREKRDHEREKEKERERGRRTREREKRREVDSDYSDGESRERDRKRHRKEDGDYKKRERERSVGKQNRQTEEREGSPRKKSGGDDSDTKDEERKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGPGNGKHDTSMDVDEDDKPADKGPKDAMVVDTDNGTVASDLQDGSAGAPADEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAVDIKSKDKGNEQSRGAQSRKGSNKSIGRIIPGEESESDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEISKITSEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLGSKILETIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVMGIRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVNAPALPTPISAAQLMTNGGLPVSLPAVLGLQTATVLPGTGLPLAANDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALQLPGGTQPGKYSVV 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01915 1139 MobiDBLite consensus disorder prediction 917 948 - -
Cca06g01915 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 712 IPR027417 -
Cca06g01915 1139 Coils Coil 233 270 - -
Cca06g01915 1139 MobiDBLite consensus disorder prediction 373 435 - -
Cca06g01915 1139 Gene3D - 453 710 IPR027417 -
Cca06g01915 1139 Pfam DEAD/DEAH box helicase 526 697 IPR011545 GO:0003676|GO:0005524
Cca06g01915 1139 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 167 956 - -
Cca06g01915 1139 Coils Coil 1103 1126 - -
Cca06g01915 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 883 IPR027417 -
Cca06g01915 1139 SMART ultradead3 520 725 IPR014001 -
Cca06g01915 1139 MobiDBLite consensus disorder prediction 1 278 - -
Cca06g01915 1139 Gene3D - 711 885 IPR027417 -
Cca06g01915 1139 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 656 664 IPR000629 -
Cca06g01915 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 882 IPR001650 -
Cca06g01915 1139 MobiDBLite consensus disorder prediction 416 431 - -
Cca06g01915 1139 MobiDBLite consensus disorder prediction 1 350 - -
Cca06g01915 1139 MobiDBLite consensus disorder prediction 286 324 - -
Cca06g01915 1139 CDD DEADc_DDX46 490 711 - -
Cca06g01915 1139 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 167 956 - -
Cca06g01915 1139 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 710 IPR014001 -
Cca06g01915 1139 SMART helicmild6 762 843 IPR001650 -
Cca06g01915 1139 Coils Coil 103 159 - -
Cca06g01915 1139 MobiDBLite consensus disorder prediction 380 394 - -
Cca06g01915 1139 MobiDBLite consensus disorder prediction 917 931 - -
Cca06g01915 1139 CDD SF2_C_DEAD 722 852 - -
Cca06g01915 1139 Pfam Helicase conserved C-terminal domain 735 843 IPR001650 -
Cca06g01915 1139 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 501 529 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01915 Cca-Chr6 34449104 34454391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01915 488 863 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 6.44e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01915 K12811 - gmx:100784306 1721.06