Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01904 ATGGTACTGGGTGGTGCAGGCAACCTCTCTGCATTGATGCTATGTTCCACAAAGCTCGTGCGTTCTGTGTTTCTCAAACGTTGTTTGTTGCGGAATCTGTGTACTACAAGTGCAGCACCAGATACCATAGCCAGACACATTGATGCACAGATACGTGCTCTTTCCTCACAAGGCAACATTGAAGAAGCTCTTTCACTTCTTCACACCCACGCTTCTCTCTCCCTTCAAACCTATGCCTCTCTGTTCCATGCTTGTGCTCACAAAAAGTGCCTCCAACATGGCATGGCTCTGCACCATTACATGCTCCACAAAGACCCCACATTTCAAAACGACCTCTTTCTCACCAATCACATCATAAACATGTACTGCAAGTGTGGCCACTTAGCCTATGCCCGCCACGTGTTTGATCAAATGTCGCATAGAAATGTTGTTTCTTGGACTGCTCTCATTTCTGGGTATGCCCAATCTGGCCTAATCAGAGAGTGTTTCTCTCTATTCTCTGGCTTGCTGGCTCACATTCGCCCCAATGAATTCGCTTTTGCAAGTTTGCTTAGCGCGTGTGAGGAGCATGACATTGAGTGTGGCATGCAGGTACATGCAGTTGCTTTGAAAATTTCTTTGGATGCCAATGTATATGTTGCAAATGCTCTTATTACGATGTATAGCAAGCGCTCTGGTTCCTGGGGAAGTTATGATCAGACGCCAGATGATGCGTGGACCGTGTTCAAGTCAATGGAGTTCCGAAATCTTATATCTTGGAATTCAATGATTGCAGGTTTTCAACTTCGTGGACTCGGGGACAAAGCCATTCGCCTGTTTGCACATATGTTCTGCAAAGGAATTGGGTTTGACCGTGCCACACTGCTCAGTGTCTTCTCTTCATTGAATGAATGCGGTGCTTTTGATGACATTGACATACATCTCAGGAAATGTTTTCAATTGCACTGTCTCACTATTAAAAGTGGTCTTATTTCAGAAATTGAAGTGGTAACTGCATTGATAAAATCCTATGCAAATCTTGGAGGACACATTTCTGATTGTTATAGAATCTTCCTTGATACAAGCAGCCAATTGGATATTGTGTCATGGACTGCTCTTATTTCGGTGGTTGCAGAACGGGATCCTGAACAGGCTTTTCTCCTTTTCTGTCAACTTCATCGTCAAAATTATTTGCCAGACTGGTATACATTCTCAATTGCCTTAAAAGCTTGTGCATACTTTGTGACTGAGCAACATGCCATGGCCATTCACTCACAAGTAATTAGAAAAGGGTTTCAGGAAGATACCGTACTTTCTAATGCCTTGATACATGCTTATGCAAGGTGTGGCTCCTTAGCTTTGTCTGAACAAGTATTCCATGAAATGGGCAGCCGTGATTTGGTCTCTTGGAATTCAATGTTCAAGTCTTATGCCATACATGGGCAAGCTAAAGGTGCACTGGAGCTCTTCCAGCAAATGCATGTTTGTCCAGATTCTGCAACCTTTGTTGCGCTTCTCTCAGCTTGCAGTCATGTAGGACTTGTTGATGAAGGAGTGAAATTGTTTAACTCTATGTCTGGTGATCATGGTATTGTTCCTCAACTAGATCACTATTCCTGCATGATTGACCTTTATGGACGAGCTGGGAAGTTATCTGAGGCTGAGAATTTGATACGTAAAATGCCGATGGAACCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCCGGAAGCATGGTGAAGCTCGCTTGGCCAAATTAGCAGCTGATAAATTTAAAGAGTTAGAACCTAACAAATCATTGGGATATGTACAAATGTCAAACATATATTCCTCTGGAGGTAGTTTTACAGAAGCTGGCCTGACTAGGAAGGAAATGAGAGACTACAAAGTGAGAAAACAACCTGGATTAAGCTGGATTGAGATTGGGAAGCAGGTTCATGAGTTTGGTTCTGGTGGTCAACATCATCCGCACAGAGGGGCCATATTAAGCCGGCTTGAGATATTGATTGGACAATTGAAAGAGATGGGTTATGTGCCAGAGCTTAGTCTAGCCTTGTATGACACGGAAGTGGAGCACAAAGAAGACCAATTGCTTCATCACAGTGAGAAGATGGCATTGGTATTTGCCATAATGAACGAAGGAAGCTTGCCTTGTAGTGGGAATGTCATTAAAATAATGAAGAATATTCGTATTTGTGTGGATTGCCACAACTTCATGAAATTAGCATCATATCTATTTCAGAAGGAGATTGTTGTGAGAGATTCAAACCGTTTTCACCACTTCAAATATGCAACTTGCTCTTGTAATGACTATTGGTAA 2304 0.4262 MVLGGAGNLSALMLCSTKLVRSVFLKRCLLRNLCTTSAAPDTIARHIDAQIRALSSQGNIEEALSLLHTHASLSLQTYASLFHACAHKKCLQHGMALHHYMLHKDPTFQNDLFLTNHIINMYCKCGHLAYARHVFDQMSHRNVVSWTALISGYAQSGLIRECFSLFSGLLAHIRPNEFAFASLLSACEEHDIECGMQVHAVALKISLDANVYVANALITMYSKRSGSWGSYDQTPDDAWTVFKSMEFRNLISWNSMIAGFQLRGLGDKAIRLFAHMFCKGIGFDRATLLSVFSSLNECGAFDDIDIHLRKCFQLHCLTIKSGLISEIEVVTALIKSYANLGGHISDCYRIFLDTSSQLDIVSWTALISVVAERDPEQAFLLFCQLHRQNYLPDWYTFSIALKACAYFVTEQHAMAIHSQVIRKGFQEDTVLSNALIHAYARCGSLALSEQVFHEMGSRDLVSWNSMFKSYAIHGQAKGALELFQQMHVCPDSATFVALLSACSHVGLVDEGVKLFNSMSGDHGIVPQLDHYSCMIDLYGRAGKLSEAENLIRKMPMEPDSVIWSSLLGSCRKHGEARLAKLAADKFKELEPNKSLGYVQMSNIYSSGGSFTEAGLTRKEMRDYKVRKQPGLSWIEIGKQVHEFGSGGQHHPHRGAILSRLEILIGQLKEMGYVPELSLALYDTEVEHKEDQLLHHSEKMALVFAIMNEGSLPCSGNVIKIMKNIRICVDCHNFMKLASYLFQKEIVVRDSNRFHHFKYATCSCNDYW 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01904 767 Pfam DYW family of nucleic acid deaminases 671 767 IPR032867 GO:0008270
Cca06g01904 767 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 175 674 - -
Cca06g01904 767 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 46 371 - -
Cca06g01904 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 175 674 - -
Cca06g01904 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 46 371 - -
Cca06g01904 767 TIGRFAM PPR: pentatricopeptide repeat domain 531 554 IPR002885 -
Cca06g01904 767 TIGRFAM PPR: pentatricopeptide repeat domain 433 460 IPR002885 -
Cca06g01904 767 TIGRFAM PPR: pentatricopeptide repeat domain 494 526 IPR002885 -
Cca06g01904 767 TIGRFAM PPR: pentatricopeptide repeat domain 144 167 IPR002885 -
Cca06g01904 767 TIGRFAM PPR: pentatricopeptide repeat domain 116 144 IPR002885 -
Cca06g01904 767 TIGRFAM PPR: pentatricopeptide repeat domain 461 487 IPR002885 -
Cca06g01904 767 Gene3D Tetratricopeptide repeat domain 191 304 IPR011990 GO:0005515
Cca06g01904 767 Pfam E motif 573 635 IPR046848 -
Cca06g01904 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Cca06g01904 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Cca06g01904 767 Pfam PPR repeat 116 142 IPR002885 -
Cca06g01904 767 Pfam PPR repeat 144 167 IPR002885 -
Cca06g01904 767 Pfam PPR repeat 251 281 IPR002885 -
Cca06g01904 767 Pfam PPR repeat 433 458 IPR002885 -
Cca06g01904 767 Pfam PPR repeat 494 519 IPR002885 -
Cca06g01904 767 Pfam PPR repeat 461 487 IPR002885 -
Cca06g01904 767 Pfam PPR repeat 530 555 IPR002885 -
Cca06g01904 767 Gene3D Tetratricopeptide repeat domain 369 487 IPR011990 GO:0005515
Cca06g01904 767 Gene3D Tetratricopeptide repeat domain 488 649 IPR011990 GO:0005515
Cca06g01904 767 Gene3D Tetratricopeptide repeat domain 44 190 IPR011990 GO:0005515
Cca06g01904 767 Pfam PPR repeat family 359 405 IPR002885 -
Cca06g01904 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Cca06g01904 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 526 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01904 Cca-Chr6 34379286 34381589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01904 78 767 Glycoside Hydrolase AT3G49170 36.454 1.00e-134 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01904 - - gmx:100799117 1417.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01904 06 34379286 34381589 Cca02g02334 02 44122748 44131449 PCT