Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01897 ATGGAACAAACAACCACCACCATGCAAGAACATGTTATAGCTCCAACATCATCATCGTACCGTGGTGTTCGACAACGAAAATGGGGCAAATGGGTGTCGGAAATTCGCGAGCCAGGGAAGAAAAGTAGAATATGGTTAGGGAGCTACGAGACACCAGAGATGGCAGCAGCAGCATATGACGTGGCAGCGTTGCACCTTAGAGGACGCGCCGCGAGGCTCAACTTTCCCGAATTGGTTGAGACATTGCCACGGCCAAAGAGTTCGAAATCCGAGGATGTTCAAGTGGCAGCACAAGAAGCAGCATTGAGGTTCAGAAGAACACCAATGATGtcatcatcatcatcttcatcatcaATGTCTGATCAAGAATGTCGTAATGATATTAAGGGTGGTGTGGTTCCTGTTAGGGTTGGACTCTCACCCACACAAATTCAGGCCATCAATGAGTCACCATTGGACTCACCAAAGATGTGGATGATGCATATGGCAGATGCACTCAGGTTTGGCTTTGATGATGACTCCATGATGATGACGCATCATGGTCATAATTATGCTTTGGAGTTGAGTGGATGGGAAGAAATACAGCATGAATACACCTTATGGGACTCTCCTGAATACGTGTAA 624 0.4519 MEQTTTTMQEHVIAPTSSSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYETPEMAAAAYDVAALHLRGRAARLNFPELVETLPRPKSSKSEDVQVAAQEAALRFRRTPMMSSSSSSSSMSDQECRNDIKGGVVPVRVGLSPTQIQAINESPLDSPKMWMMHMADALRFGFDDDSMMMTHHGHNYALELSGWEEIQHEYTLWDSPEYV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01897 207 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Cca06g01897 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 164 - -
Cca06g01897 207 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Cca06g01897 207 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Cca06g01897 207 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Cca06g01897 207 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Cca06g01897 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 3 164 - -
Cca06g01897 207 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Cca06g01897 207 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Cca06g01897 207 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01897 Cca-Chr6 34328862 34329752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01897 18 202 AP2-EREBP Transcription Factor Family AT1G71450 50.265 3.69e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g01897 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01897 - - gmx:100788567 298.901