Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca06g01897 | ATGGAACAAACAACCACCACCATGCAAGAACATGTTATAGCTCCAACATCATCATCGTACCGTGGTGTTCGACAACGAAAATGGGGCAAATGGGTGTCGGAAATTCGCGAGCCAGGGAAGAAAAGTAGAATATGGTTAGGGAGCTACGAGACACCAGAGATGGCAGCAGCAGCATATGACGTGGCAGCGTTGCACCTTAGAGGACGCGCCGCGAGGCTCAACTTTCCCGAATTGGTTGAGACATTGCCACGGCCAAAGAGTTCGAAATCCGAGGATGTTCAAGTGGCAGCACAAGAAGCAGCATTGAGGTTCAGAAGAACACCAATGATGtcatcatcatcatcttcatcatcaATGTCTGATCAAGAATGTCGTAATGATATTAAGGGTGGTGTGGTTCCTGTTAGGGTTGGACTCTCACCCACACAAATTCAGGCCATCAATGAGTCACCATTGGACTCACCAAAGATGTGGATGATGCATATGGCAGATGCACTCAGGTTTGGCTTTGATGATGACTCCATGATGATGACGCATCATGGTCATAATTATGCTTTGGAGTTGAGTGGATGGGAAGAAATACAGCATGAATACACCTTATGGGACTCTCCTGAATACGTGTAA | 624 | 0.4519 | MEQTTTTMQEHVIAPTSSSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYETPEMAAAAYDVAALHLRGRAARLNFPELVETLPRPKSSKSEDVQVAAQEAALRFRRTPMMSSSSSSSSMSDQECRNDIKGGVVPVRVGLSPTQIQAINESPLDSPKMWMMHMADALRFGFDDDSMMMTHHGHNYALELSGWEEIQHEYTLWDSPEYV | 207 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca06g01897 | 207 | Gene3D | AP2/ERF domain | 19 | 78 | IPR036955 | GO:0003700|GO:0006355 | |
Cca06g01897 | 207 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 3 | 164 | - | - | |
Cca06g01897 | 207 | SUPERFAMILY | DNA-binding domain | 18 | 77 | IPR016177 | GO:0003677 | |
Cca06g01897 | 207 | PRINTS | Ethylene responsive element binding protein signature | 20 | 31 | IPR001471 | GO:0003700|GO:0006355 | |
Cca06g01897 | 207 | PRINTS | Ethylene responsive element binding protein signature | 58 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Cca06g01897 | 207 | CDD | AP2 | 18 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Cca06g01897 | 207 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 | 3 | 164 | - | - | |
Cca06g01897 | 207 | ProSiteProfiles | AP2/ERF domain profile. | 19 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Cca06g01897 | 207 | SMART | rav1_2 | 19 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Cca06g01897 | 207 | Pfam | AP2 domain | 19 | 68 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca06g01897 | Cca-Chr6 | 34328862 | 34329752 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca06g01897 | 18 | 202 | AP2-EREBP Transcription Factor Family | AT1G71450 | 50.265 | 3.69e-54 | 169 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Cca06g01897 | AP2 | 1.5e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca06g01897 | - | - | gmx:100788567 | 298.901 |