Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01896 ATGGACATGCCTTGTTCATCGTCTTCGAGTGGTGCTGCTTCATCCGCATACAGAGGCGTTCGCAAGAGGAAATGGGGCAAGTGGGTCTCCGAAATACGCGAGCCGGGAACCAAGACCAGAATCTGGCTGGGGAGCTTCGAAACGCCGGAAATGGCTGCGGCGGCGTACGACGTCGCTGCGCTGCACTTCAGGGGGCGCGACGCCAGGCTAAACTTCCCTGAGCTCGCCACCACGCTACCACGCCCCCTCACCAACAATGCCGACCACATTCGCATGGcggcgcacgaggccgcgctccgcctccggaccaacccggcgccgccccagagctcggcctcggcgccgccgcTCACGGTGAGACTCTCCCCCACGCAGATTCAGGCCATCAATGACTCCCCCATGGACTCCCCCACGTGGATGCAAATGCCCGACACCTTCATGATGCATGATCAATCCATCATCTTCTCCAATGGCTATTCCTTTGAGGATAACGAGTGGGAGGATATTCAGAATGATTCTCTTTGGGATCCTTAA 534 0.485 MDMPCSSSSSGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELATTLPRPLTNNADHIRMAAHEAALRLRTNPAPPQSSASAPPLTVRLSPTQIQAINDSPMDSPTWMQMPDTFMMHDQSIIFSNGYSFEDNEWEDIQNDSLWDP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01896 177 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Cca06g01896 177 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Cca06g01896 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 176 - -
Cca06g01896 177 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Cca06g01896 177 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Cca06g01896 177 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cca06g01896 177 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Cca06g01896 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 7 176 - -
Cca06g01896 177 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Cca06g01896 177 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01896 Cca-Chr6 34306900 34308068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01896 15 177 AP2-EREBP Transcription Factor Family AT1G71450 60.588 1.00e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca06g01896 AP2 3.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01896 - - gmx:100815719 315.079