Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01894 ATGGGGTTCTGGGGGATTGAAGTGAAACCTCGCAAACCGTATCCTTATCACGCAGACAATGTGCAAGGGAAGCTTCATGTTACTCAGGCTACTCTAGGCGCTGGCTCATCATCGGAGAAAACCATTCTTCAGTGCTCTTCTGGACACAAAAGTCCAGTTTTCTTGTGTTCACTGATTCCGGATAAGATTGAGTCATGCCCTTTGAATCTCGAGTTTGATGCTGATGACTTGGTGGCATTCTCAGTGATTGGTCCAAGAAGCGTCCACCTTTCTGGTTTTTTTGCTGCTACTGATGGGGATGCCCTTAGGGATGACTATGAATATGATTCATGGGGAGAGGATATTGAAGGAACTGAGACAGACGATTCATCTGAATTTGACAGTGAAGATGATGATATTGACATGTACCCATCTTCGCCCGTCCCAAATAGGGGAGTTATAATTGAGGAAATAGTGGATGATGATGAACTTGATAGTGGAGATGATCCAATTAAGCGATTAAAGAATAAGAAACAGGTAGCTCAGTTAAAAGAGAAAGACAGCAAAAGTTCCAAGCTTCCAATTGTCTCTGACGGTGAGGTTGAACTTGTGGAAAGTGAAGATGAAGATGGTTTTCCAATTTCCACTGCAGAGAAAGCTTTGTCTGTCTCTCAGAAGGCAGAAGCCAGTAAGAAAACTGAGAAAGCCAACAAGAAGGGAAAAGATGCTGAGCATTCTGCTAACTTAAAAAGAAAAGTTGATAGTGCTGATGAAGATGAGCCACAGGATGGGAAAAAGAAGAAGAAAAAAAACAAGTTGAAAGAACATATTAAAGGGGAAAGTGCTCCTGCATCTGGCAATAGCAATGGGACAAATAATACTACACCAGCTGCAAAGCATCCCAAGGACGTTAAAACTACAATCAACCTGAGCGATCCTTCTCATTCAGGGGATGAACATGATGGGAAGCAATCCAATACGGAGGTCCTTGCTGagaagaaaaaaaagaaaaagaagaaaaagaccaaggagTCTGAAGGGGTAGCTGCTGCAAATCAAACTACCCCAACTGCTGAAAAGCAGAATTTGTCTACCTCAGAGAAAAAGGGGAAAAAACAAATTGAAACCAAGCCATCTCAAGTGAGAACTTTTCCAAATGGATTGGTTATAGAGGAGCTGTATATGGGTAAACCTGATGGCAAAAGAGCTGCTCCTGGAAAGAAGGTCAGTGTTAAATATATTGGCAAACTGCAAAAAGATGGGAAAATATTTGACTCGAATGTGGGAAGAGCACCCTTTGGATTTCGGCTGGGTGTAGGACAAGTCATCAAAGGGTGGGAGGTTGGGATCAATGGGATGAGGATTGGGGATAAAAGAAGGATCACTATTCCACCATCTATGGGTTACGCGGACAAGCGCGTTGGGAGTATACCACCAAATTCGTGGCTTGTATTTGATGTTGAGTTGGTTAATGTTGATCGCTGA 1464 0.4187 MGFWGIEVKPRKPYPYHADNVQGKLHVTQATLGAGSSSEKTILQCSSGHKSPVFLCSLIPDKIESCPLNLEFDADDLVAFSVIGPRSVHLSGFFAATDGDALRDDYEYDSWGEDIEGTETDDSSEFDSEDDDIDMYPSSPVPNRGVIIEEIVDDDELDSGDDPIKRLKNKKQVAQLKEKDSKSSKLPIVSDGEVELVESEDEDGFPISTAEKALSVSQKAEASKKTEKANKKGKDAEHSANLKRKVDSADEDEPQDGKKKKKKNKLKEHIKGESAPASGNSNGTNNTTPAAKHPKDVKTTINLSDPSHSGDEHDGKQSNTEVLAEKKKKKKKKKTKESEGVAAANQTTPTAEKQNLSTSEKKGKKQIETKPSQVRTFPNGLVIEELYMGKPDGKRAAPGKKVSVKYIGKLQKDGKIFDSNVGRAPFGFRLGVGQVIKGWEVGINGMRIGDKRRITIPPSMGYADKRVGSIPPNSWLVFDVELVNVDR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01894 487 MobiDBLite consensus disorder prediction 221 259 - -
Cca06g01894 487 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 241 - -
Cca06g01894 487 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 249 485 - -
Cca06g01894 487 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 399 486 IPR001179 GO:0003755
Cca06g01894 487 PIRSF FK506-bp_FPR3 49 274 IPR023566 GO:0003755
Cca06g01894 487 PIRSF FK506-bp_FPR3 270 486 IPR023566 GO:0003755
Cca06g01894 487 PIRSF FK506-bp_FPR3 1 53 IPR023566 GO:0003755
Cca06g01894 487 Gene3D Nucleoplasmin core domain 1 100 - -
Cca06g01894 487 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Cca06g01894 487 PANTHER PEPTIDYLPROLYL ISOMERASE 249 485 - -
Cca06g01894 487 PANTHER PEPTIDYLPROLYL ISOMERASE 1 241 - -
Cca06g01894 487 MobiDBLite consensus disorder prediction 112 134 - -
Cca06g01894 487 Gene3D - 343 487 IPR046357 GO:0003755
Cca06g01894 487 MobiDBLite consensus disorder prediction 112 144 - -
Cca06g01894 487 SUPERFAMILY FKBP-like 370 485 - -
Cca06g01894 487 MobiDBLite consensus disorder prediction 176 371 - -
Cca06g01894 487 MobiDBLite consensus disorder prediction 307 325 - -
Cca06g01894 487 MobiDBLite consensus disorder prediction 340 356 - -
Cca06g01894 487 MobiDBLite consensus disorder prediction 275 293 - -
Cca06g01894 487 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 394 483 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01894 Cca-Chr6 34297160 34303838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01894 395 485 Calmodulin-binding Proteins AT5G48570 34.694 1.23e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01894 K14826 - gmx:100792856 760.755