Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01891 ATGAATTGTGCCGCTCATGATGGTCACCTCGACGTTGTTAAACGTTTGATTGGATTTGGGGTAGATCCCAATAAGCTTGATTATGATGGCAGAACACCTTTGCATATCTCAGCATCAAAAGGATATGTAGATATTTCTTCCTTTCTTGTTGAACAAGGAGTAAATATCAATTCCACAGATAAATTTGGACCCACTCCCATGCTTGAAGCCATCAAGAATGGACATGAAGAAGTAGCATCTGTACTTGTTAATTCGGGAGCGATCCTTACTATTGATGATGTTGGTAACTTTCTCTGCATGACTGTTGTAAAGAAGGACTTGGACCTTTTAAAAAGGGTTTTGGCTTGTGGAATCAATCCAAATGCCAAAAATTACGATCAACATACACCTCTTCACATAGCTGCCTCTCAAGGTTTGATTACAATGGCTGAATTACTACTAGAAGTAGGAGCAAGTGTTTTATCTAAGGACAGATGGGGAAATACACCTCTTCTTAAAGCTCATACCAGTGGAAATAGAAATATGATCAAAATGCTCGAAGTTGTTAAAGTTTCTCAGTTGGCTGAGTTGTCCAGTAGTATTCATGAAACTCAAGCAACACCAATATTGCAGTCAAGAAATGAAATTCCCAGAAAGAGGTGTATAGTATTTCCTTTCCACCCATGGGATCAGAAAGAGGAAAGAAAAGAGGGAGTGGTCCTATGGGTTCCACAAAGCATTGAAGAGCTTATAAAGGAAGCGATGAAACATTTGGACATTCCAAATGGCTTGGATTCTAGATGCAAGCCCTGGAAAAGTTCGAGCAGGTGGAGATGGAGAGGACCATCCAACAGAACTCATATCCTTTCTAAGTACATTGCCACTCCCTTGCTTGAAGGCATCAAGAATGGACATGAAGAAGTAGCATCGGTACTTGTTAATTCGGGAGCGATCCTTACTATTGATGATGTTGGTAACTTTCTCTGCATGATTGTTGTAAAGAAGGACTTGGACCTTTTAAAAAGGTTTTTGGCTTGTGGAATCAATCCAAATGCCAAAAATTATGATCAACGTACACCTCTTCACATAGCTGCCTCTCAAGGTTTGATTACAATGGCTGAATTACTACTAGAAGCAGGAGCAAGTGTTTTATCTAAGGACAGATGGGGAAATACACCTCTTCTTGAAGCTCATACCGGTGGAAATAGAAATATGATCAAAATGCTCGAAGTTGCTAAAGTTTCTCAGTTGGCTGAGTTGTCCAGTAGTATTCATGAAACTCAAGGCTTGGATTCTGGATGCAAGCCCTGGAAAAGTTCGAGCAGGTGGAGATGGAGAGGACCATCCAGCAGAACTCATATCCTTTCTAAGTACATTGCCACTCCCTTGCTTGAAGCCATCAAGAATGGACATGAAGAAGTAGCATCTGTACTTGTTAATTCGGGAGCGATCCTTACTATTGATGATTTTGGTAACTTTCTCGGCATGATTGTTGTAAAGAAGGACTTGGACCTTTTAAAAAGGGTTTTGGCTTATGGAATCAATCCAAATGCCAAAAATTACGATCAACGTACACCTCTTCACATAGCTGCCTCTCAAGATTTGATTACAATGGCTGAATTATGA 1605 0.4019 MNCAAHDGHLDVVKRLIGFGVDPNKLDYDGRTPLHISASKGYVDISSFLVEQGVNINSTDKFGPTPMLEAIKNGHEEVASVLVNSGAILTIDDVGNFLCMTVVKKDLDLLKRVLACGINPNAKNYDQHTPLHIAASQGLITMAELLLEVGASVLSKDRWGNTPLLKAHTSGNRNMIKMLEVVKVSQLAELSSSIHETQATPILQSRNEIPRKRCIVFPFHPWDQKEERKEGVVLWVPQSIEELIKEAMKHLDIPNGLDSRCKPWKSSSRWRWRGPSNRTHILSKYIATPLLEGIKNGHEEVASVLVNSGAILTIDDVGNFLCMIVVKKDLDLLKRFLACGINPNAKNYDQRTPLHIAASQGLITMAELLLEAGASVLSKDRWGNTPLLEAHTGGNRNMIKMLEVAKVSQLAELSSSIHETQGLDSGCKPWKSSSRWRWRGPSSRTHILSKYIATPLLEAIKNGHEEVASVLVNSGAILTIDDFGNFLGMIVVKKDLDLLKRVLAYGINPNAKNYDQRTPLHIAASQDLITMAEL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01891 534 Gene3D - 423 534 IPR036770 -
Cca06g01891 534 PANTHER POTASSIUM CHANNEL SKOR-LIKE 1 256 - -
Cca06g01891 534 SMART ANK_2a 451 480 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 482 511 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 382 411 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 126 155 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 316 345 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 349 378 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 1 25 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 285 314 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 29 58 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 93 122 IPR002110 GO:0005515
Cca06g01891 534 SMART ANK_2a 62 91 IPR002110 GO:0005515
Cca06g01891 534 Gene3D - 277 421 IPR036770 -
Cca06g01891 534 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Cca06g01891 534 PRINTS Ankyrin repeat signature 365 379 IPR002110 GO:0005515
Cca06g01891 534 PRINTS Ankyrin repeat signature 30 45 IPR002110 GO:0005515
Cca06g01891 534 Gene3D - 1 100 IPR036770 -
Cca06g01891 534 ProSiteProfiles Ankyrin repeat profile. 29 61 IPR002110 GO:0005515
Cca06g01891 534 Pfam Ankyrin repeats (3 copies) 2 91 IPR002110 GO:0005515
Cca06g01891 534 Pfam Ankyrin repeats (3 copies) 104 179 IPR002110 GO:0005515
Cca06g01891 534 ProSiteProfiles Ankyrin repeat profile. 349 381 IPR002110 GO:0005515
Cca06g01891 534 Pfam Ankyrin repeats (many copies) 493 525 IPR002110 GO:0005515
Cca06g01891 534 Pfam Ankyrin repeats (many copies) 337 387 IPR002110 GO:0005515
Cca06g01891 534 Gene3D - 101 182 IPR036770 -
Cca06g01891 534 ProSiteProfiles Ankyrin repeat region circular profile. 29 61 - -
Cca06g01891 534 ProSiteProfiles Ankyrin repeat profile. 126 158 IPR002110 GO:0005515
Cca06g01891 534 Pfam KHA, dimerisation domain of potassium ion channel 212 253 IPR021789 -
Cca06g01891 534 ProSiteProfiles Ankyrin repeat profile. 1 28 IPR002110 GO:0005515
Cca06g01891 534 PANTHER POTASSIUM CHANNEL SKOR-LIKE 285 420 - -
Cca06g01891 534 PANTHER POTASSIUM CHANNEL SKOR-LIKE 451 534 - -
Cca06g01891 534 SUPERFAMILY Ankyrin repeat 287 533 IPR036770 -
Cca06g01891 534 PANTHER POTASSIUM CHANNEL AKT1 1 256 IPR045319 GO:0005249|GO:0006813
Cca06g01891 534 ProSiteProfiles Ankyrin repeat region circular profile. 349 381 - -
Cca06g01891 534 SUPERFAMILY Ankyrin repeat 3 179 IPR036770 -
Cca06g01891 534 ProSiteProfiles Ankyrin repeat region circular profile. 126 158 - -
Cca06g01891 534 PANTHER POTASSIUM CHANNEL AKT1 285 420 IPR045319 GO:0005249|GO:0006813
Cca06g01891 534 PANTHER POTASSIUM CHANNEL AKT1 451 534 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01891 Cca-Chr6 34275056 34279831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01891 357 534 Ion Channels AT5G37500 33.708 8.13e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01891 K21867 - ccaj:109810895 629.402