Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01887 ATGAGTTGGACTTCAAAGATGCATGCAACCACCAGAAACAAGTTCAAGGGCGTTCGCCGTCGGAAATGGGGCAAGTGGGTCTCCGAGATTCGCGTTCCCGGCTCGCAGGAGCGTCTGTGGCTCGGAACCTACGCCACGCCGGAGGCTGCGGCGGTGGCTCACGACGTCGCCGTTTATTATCTCAGGAGGCCCTCTTCGTTGGACAAACTTAACTTCCCCGACACTTTCTCCTCGTACCGTGTTCAACTCAGGGACATGTCTCCGAGGTCTGTTCAGAAGGTGGCTTCCGATGTTGCCATGGATGTGGACGCCAGAAACATTGTTGCCGACAAAACCTCATCCATGGCCGTCGAAGACACTTTCGAGAGTCAGAACAAAATTGTTAATGGTGATGATCACTTTGGAGCAGGTGCTGATCATTGTGATGTGTTATGGTGGGATGGATTCGGGAATGATGAGTCTGGGACATGGCAAACAAGTTTTCAAGATTGTAGCGAAGGGGAGAATTTGAGCGTTTCCATTCAAGATTATCTTTAG 537 0.5121 MSWTSKMHATTRNKFKGVRRRKWGKWVSEIRVPGSQERLWLGTYATPEAAAVAHDVAVYYLRRPSSLDKLNFPDTFSSYRVQLRDMSPRSVQKVASDVAMDVDARNIVADKTSSMAVEDTFESQNKIVNGDDHFGAGADHCDVLWWDGFGNDESGTWQTSFQDCSEGENLSVSIQDYL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01887 178 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Cca06g01887 178 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Cca06g01887 178 ProSiteProfiles AP2/ERF domain profile. 14 73 IPR001471 GO:0003700|GO:0006355
Cca06g01887 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 125 - -
Cca06g01887 178 CDD AP2 14 75 IPR001471 GO:0003700|GO:0006355
Cca06g01887 178 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Cca06g01887 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 7 125 - -
Cca06g01887 178 Gene3D AP2/ERF domain 13 74 IPR036955 GO:0003700|GO:0006355
Cca06g01887 178 SUPERFAMILY DNA-binding domain 14 74 IPR016177 GO:0003677
Cca06g01887 178 SMART rav1_2 14 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01887 Cca-Chr6 34239457 34240193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01887 10 104 AP2-EREBP Transcription Factor Family AT1G71520 59.794 1.24e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g01887 AP2 2.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01887 - - aprc:113869965 218.394