Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01884 ATGGGGTGCATATGCTTTAAGTCCTCAAACAATGACAAAGTTTTTGAATATGAGAAAGACAAGGAAAAGGAATGGAACAAGTATTCAGTACAATTGGTTGCTCCTACTTTGTTTGATGATGGTAGCAGGAATGGTTCGGTGCCCCGAATGACTAAGTCATCATCACAAGTGATTAGAGGGTCTATCAAAGTGCCATCAGAAGATAAATGCAACCACTTGGAATTCACAAAAAGCCAGCTCCAGAAGTGCATCGCAATGAATTCTGGTGTAGGTGACAGAAAGCCACTAATGAATAGAATACTAAGTGTGCAACATTTTGCTGGAGAATATGTTGATGTTGGATGGCCAATGTGGTTATCTTCAGTAGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGAAGGGCAGACTCTTTTGAAAAATTTGACCAAATCGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCCTTGAAGAAGGTTCGCTTTTCAAGTACAGATCCGGAAAGTGTCCGGTTCATGGCAAGGGAAATCTTTATCTTGCGTCAACTTGACCATCCTAACGTCATGAAGCTCGAAGGTATTGTCACTTCTAGAACATCCACCAGTTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGGCTAGCAACTATACATGGTGTGAAGTTCACTGAACCGCAGGTAAAATGTTATATGCAACAACTGTTTCGTGGGCTTGAACACTGCCATAGTCGGGGTGTGTTGCACCGTGACATCAAGGGTTCAAATCTTCTGATAGACAGGAATGGAAATCTTAAGATTGCGGATTTTGGTCTTGCAACACTTTATGATCCTAATAAAAAGCAGGCATTGACTAGTCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTAGGTGCTACGGAGTATGGAGTTGCAATTGACTTGTGGAGTGCTGGTTGCATTCTAGCGGAATTGCAAGCGGGGAAGCCTATCATGCCTGGAAGGACAGAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCTCCATCTGAAGACTATTGGCAGAGAACAAAGTTTCCCCATGCAACAAGTTTTAAGCCACAACAACCTTACAGCCGCCAAGTTTCCGAAACATTTAAAAACTTTTCTCCTACAGCATTGGCTCTTGTTGATAAGCTCCTTTCAATAGAACCAGAAGATAGAGGATCTGCAACTTCCGCACTTGAGAGTGAGTTCTTCACTACAAACCCATTACCTTGTGATCCCTCAAGTTTACCTAAGTTTTCACCAAGCAAGGAGTTTGATGCCAAGCGTCGAGAGAAGGAATCTTCAAGGAAAAAAGTGGAAGCTGTTAAAGGACGAGCACCAGCATCTGTTTATAGGGGACCAGGAGAAACCAAAGTACTAGAAACACCAGATTATAATGCACAGGGAAATATATCTATGCGGGGCAAGTCAAATACAAGAATGTCCCGTCTTAAATATCAATCCCAGGAGGATGGTGTGCGTAACGACATCAGCGATCCTAACAAAACAAGTCTACACAATGTCCACACACATTCTACTTCAATGATGACCAACAGTATAGCAATGCCATCCTTGTTAAGTAAGAAACAAGAATCTTCTAGGCTGAATCCTGAGTTCTGGACACACAAGTCTAATATGAATCATGCAGCAGCAGATTTGTCTGCCGCTTCCATTAAAAAGGAACATGGGATGGGCTATTTTCCGAAGAAAAGTAGGATACACTGCTCTGGGCCATTGGTGCCTCCAGGTGGCAACATTGATGACATGTTGAAAGAGCATGAGCGATTAATGCAAGATGTTTTCCGAAGTGTGAAAGCGAATCCGTAA 1881 0.429 MGCICFKSSNNDKVFEYEKDKEKEWNKYSVQLVAPTLFDDGSRNGSVPRMTKSSSQVIRGSIKVPSEDKCNHLEFTKSQLQKCIAMNSGVGDRKPLMNRILSVQHFAGEYVDVGWPMWLSSVAAEAIKGWVPRRADSFEKFDQIGQGAYSSVHKARDLETGKIVALKKVRFSSTDPESVRFMAREIFILRQLDHPNVMKLEGIVTSRTSTSLYLVFEYMEHDLAGLATIHGVKFTEPQVKCYMQQLFRGLEHCHSRGVLHRDIKGSNLLIDRNGNLKIADFGLATLYDPNKKQALTSRVVTLWYRAPELLLGATEYGVAIDLWSAGCILAELQAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPQQPYSRQVSETFKNFSPTALALVDKLLSIEPEDRGSATSALESEFFTTNPLPCDPSSLPKFSPSKEFDAKRREKESSRKKVEAVKGRAPASVYRGPGETKVLETPDYNAQGNISMRGKSNTRMSRLKYQSQEDGVRNDISDPNKTSLHNVHTHSTSMMTNSIAMPSLLSKKQESSRLNPEFWTHKSNMNHAAADLSAASIKKEHGMGYFPKKSRIHCSGPLVPPGGNIDDMLKEHERLMQDVFRSVKANP 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01884 626 MobiDBLite consensus disorder prediction 424 477 - -
Cca06g01884 626 ProSiteProfiles Protein kinase domain profile. 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01884 626 MobiDBLite consensus disorder prediction 440 461 - -
Cca06g01884 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Cca06g01884 626 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Cca06g01884 626 SUPERFAMILY Protein kinase-like (PK-like) 131 430 IPR011009 -
Cca06g01884 626 CDD STKc_CDK9_like 138 422 - -
Cca06g01884 626 Gene3D Phosphorylase Kinase; domain 1 125 220 - -
Cca06g01884 626 Gene3D Transferase(Phosphotransferase) domain 1 221 462 - -
Cca06g01884 626 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 82 622 - -
Cca06g01884 626 Pfam Protein kinase domain 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01884 626 SMART serkin_6 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01884 626 PANTHER CELL DIVISION PROTEIN KINASE 82 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01884 Cca-Chr6 34216642 34221585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01884 130 461 Core Cell Cycle Gene Families AT5G10270 51.297 1.79e-117 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca06g01884 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01884 K08819 - gmx:100791743 947.577