Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01880 ATGCAGGGAAGCGCAGCCGACGGAGAGGCCTTGGATTTCGAGCCTGAGGACGATGACTTGATGGACGAGGAGGGCGCCCCCGACGCCGACGCATCTCCGCCTCATCCCAAGCTCAAATCCGCCATCACCGCTGCCGCCACTTCCTCTGTCGCCGCCCCTAAGAAGACCAAGGGCCGCGGATTCCGCCAGGAGACCGATGCCAACCGCAACACGCGCCTCTCTGGCTCCGACTTCGACTCTCTCACAACCGAGGGCGGCCCTGGCCCTCAGAGATCCATTGAAGGATGGATCATTCTGGTCACCGGCGTGCACGAGGAGGCGCAGGAGGACGATTTGCAGAACGCCTTTGGCGAATATGGAGAGATTAAGAACCTGCATTTGAATCTCGATCGCCGCACTGGTTTTGTCAAAGGTTATGCACTGATTGAGTATGAAAGTGCTGAGGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACACAAACCATTTATGTTGACTGGGCCTTCAGCAGTGGGCCTATTAATGAGTCAATCAGAAGAAAGAATGCTAGACCACCTCGTGAACGTCGCTCCCGAAGCCCGCGGAGGAGATATTGA 609 0.555 MQGSAADGEALDFEPEDDDLMDEEGAPDADASPPHPKLKSAITAAATSSVAAPKKTKGRGFRQETDANRNTRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYESAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESIRRKNARPPRERRSRSPRRRY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01880 202 MobiDBLite consensus disorder prediction 181 202 - -
Cca06g01880 202 MobiDBLite consensus disorder prediction 67 87 - -
Cca06g01880 202 PRINTS RNA binding motif protein 8 family signature 50 62 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Cca06g01880 202 PRINTS RNA binding motif protein 8 family signature 87 101 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Cca06g01880 202 PRINTS RNA binding motif protein 8 family signature 143 159 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Cca06g01880 202 PRINTS RNA binding motif protein 8 family signature 161 173 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Cca06g01880 202 PANTHER BNAA05G15240D PROTEIN 7 202 - -
Cca06g01880 202 SUPERFAMILY RNA-binding domain, RBD 89 200 IPR035979 GO:0003676
Cca06g01880 202 MobiDBLite consensus disorder prediction 1 92 - -
Cca06g01880 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Cca06g01880 202 SMART rrm1_1 97 170 IPR000504 GO:0003723
Cca06g01880 202 CDD RRM_RBM8 90 177 IPR033744 GO:0003729
Cca06g01880 202 MobiDBLite consensus disorder prediction 10 26 - -
Cca06g01880 202 MobiDBLite consensus disorder prediction 188 202 - -
Cca06g01880 202 Gene3D - 43 188 IPR012677 -
Cca06g01880 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Cca06g01880 202 PANTHER RNA-BINDING PROTEIN 8A 7 202 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01880 Cca-Chr6 34192814 34195646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01880 98 172 Eukaryotic Initiation Factors Gene Family AT3G11400 30.667 1.81e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01880 K12876 - gmx:100527187 338.191