Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01872 ATGAACACCACCTACATTGATTTCCTCTCCCACGCCAATACCCCTTTAACCGCTTCTGCCTTTTTCAGTCTGTTCCCACTCCCAAGCTTTCGCCTTTTCATGGGCCTTTCTCTCGCTTCCTCTTCAATTTCAAAACCCATCAACGGTTTCCCTTTTCCTCGTTCGGTTCCGTTTATGCGCTGTCGATTGAAGATTCTTTACATGGAATCCATGTTTCAAGAAGAAGGGTCGTCTTCTGTGACTTCTTCACCTCTTCAGTTCTTTTCCATGATGTCTCTTTCACCTGGCATAGGATCTCCCTATCCTTGGCACAGAGAATTGAAATCTGAGGAAAGGGGTTTGTGTTTGATCCATTTGCTGCTCACTTGTGCAAATCATGTGGCTGCTGGTAGCCTTGAAAATGCAAACACCATTCTTGAGCAGATTTCACAGCTTGCATCTCCTGATGGAGATACTATGCAGCGAATCGCTTCATACTTCACTGAAGCACTCGCTGATCGGATACTCAAAACATGGCCTGGCCTCCACAGGGCTCTCAATTCCACCAGAATAGTTATGGTTTCTGAAGAAATTCATGTTCAGAAGCTCTTCTTTGAGCTTTTCCCCTTCTTGAAGGTGGCCTATATTTTGACAAATCAGGCTATTGTTGAAGCCATGGAAGGGGAGAAAATGGTGCATATAATTGATCTCAATGCTGCCGAACCGGCGCAGTGGATTGCTCTCCTCCAAGTTTTGAGTGCACGCCTTGAAGGCCCTCCACATTTGAGAATTACTGGGGTCCATCAGCAGAAGGAGGTTTTGGATCAGATGGCTCATAAACTCACTGAAGAGGCTGAAAAGTTGGATATTCCATTCCAATTCAATCCTATAGTCAGCAAGTTGGAAAATCTTGACTTTGACAAACTTCGTGTGAAGACTGGGGAGGCACTAGCAATAAGTTCTATTCTGCAGCTACATTCCCTTTTGGCCTTGGATGATGATGCCTCGCGGAGAAAGTCTCCTCTTTTGTCCAAAAATTCGAATGCAACTCACCTGCACAAGGTCCTGCTGATGAACCAAAGCACTCTGGGTGATTTGCTTGAAAAGGATATGGTTAATGGCTACAGCCCTAGCCCTGATTCCGCCTCGTCCTCGCCGGGGTCGTCAACTGCTTCCATGAATTCAGAGAGCTTTCTCAATGCCTTGTGGGGGCTATCACCAAAGGTCATGGTTGTAACTGAGCAAGACTCTAATCACAACGGTTCAACCCTGATGGAGAGGCTGCTAGAAGCTCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAGTCCACTGTGTCAAGAGCATCCTTGGAGAGATTGAAGATTGAGAAGATGCTTTTTGGTGAGGAGATCAAGAACATCATAGCTTGTGAGGGATCTGAAAGAAAGGAAAGGCATGAGAAGATGGATAAGTGGTTCCAAAGGCTTGATTTGTCTGGCTTTGCCAACATACCTTTAAGCTATTATGGCATGTTGCAGGCGAGGAGGTTCCTGCAGAGTTATGGTTGTGAGGGATATAGGATGAGGGAGGAAAATGGTAGTGTAATGATTTGCTGGCAAGACCGCTCCTTGTTTTCTACAACAGCTTGGAGATCAAGGAAGTGA 1626 0.4545 MNTTYIDFLSHANTPLTASAFFSLFPLPSFRLFMGLSLASSSISKPINGFPFPRSVPFMRCRLKILYMESMFQEEGSSSVTSSPLQFFSMMSLSPGIGSPYPWHRELKSEERGLCLIHLLLTCANHVAAGSLENANTILEQISQLASPDGDTMQRIASYFTEALADRILKTWPGLHRALNSTRIVMVSEEIHVQKLFFELFPFLKVAYILTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVLSARLEGPPHLRITGVHQQKEVLDQMAHKLTEEAEKLDIPFQFNPIVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDDASRRKSPLLSKNSNATHLHKVLLMNQSTLGDLLEKDMVNGYSPSPDSASSSPGSSTASMNSESFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRASLERLKIEKMLFGEEIKNIIACEGSERKERHEKMDKWFQRLDLSGFANIPLSYYGMLQARRFLQSYGCEGYRMREENGSVMICWQDRSLFSTTAWRSRK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01872 541 ProSiteProfiles GRAS family profile. 107 538 IPR005202 -
Cca06g01872 541 PANTHER BNAA06G02820D PROTEIN 69 332 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cca06g01872 541 PANTHER BNAA06G02820D PROTEIN 445 540 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cca06g01872 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 445 540 IPR005202 -
Cca06g01872 541 MobiDBLite consensus disorder prediction 367 386 - -
Cca06g01872 541 Pfam GRAS domain family 116 538 IPR005202 -
Cca06g01872 541 PANTHER BNAA06G02820D PROTEIN 390 440 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cca06g01872 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 69 332 IPR005202 -
Cca06g01872 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 390 440 IPR005202 -
Cca06g01872 541 MobiDBLite consensus disorder prediction 369 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01872 Cca-Chr6 34118577 34120333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01872 68 541 GRAS Transcription Factor Family AT1G50420 67.769 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca06g01872 GRAS 1.1e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01872 - - tcc:18589932 747.273