Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01852 ATGCATTCGACCAAGAGTAGTACCAAAGAAATCGAACGACGCTACCAAAACTACCGAAAGAAGAGAAAGTGTCCTTGCGACGTGGCTGTGGTTCCTACCATGGAAGAATCCCGCGTCACCGGAGACGACAAGTGCATCAAGGTGCCCGCCgcctcagcctcagcctcagcctcagcctcagcATCACACGGTTTCATATCGGTCATCGGGCGGCGGCGCGTCATGGAGGACGCCGTCAAGGTGGTTCCGGGCTTGGTGGCGGCGGAGCAGAGTTGCGGCGGTTACGACTTCTTCGCGGTTTACGACGGGCACGGTGGGACGTGGGTGGCGAACTCTTGCCGCGACAGGCTGCACTTGCTGGTGGCGGAGGAAGTGAGGGAGAGCGCCGAGAAGGGGTTGGATTGGTGTGAGGTCATGTGTGAGTGTTTCAATAAGATGGACCGTGAAATCGGAGTTGGCGGCGGTGATGGTGACGCTGACGGCGGCGGGAACACCATGGGGTCGACAGCGTCGGTGGTGGTGGTCGGGAAGGAGGAGATAGTGGTGGCCAATTGTGGTGACTCGAGAGCGGTTTTGTGCCGTGGCGGTGTAGCTGTGCCACTTTCACGTGATCATAAGCCTGATCGTCCAGATGAAAAAGAGAGGATAGAAGCAGCAGGTGGGAGAGTGATTGATTGGAATGGAAATCGTGTTTTGGGAGTACTTGCTACTTCGAGATCCATAGGGGATCACTGCATGAAGCCTTTTGTGATATGTCAACCAGAGACTTCGGTGTACGAAAGAAGAGATTCAGATGAGTTTATTGTGGTGGCGAGTGATGGGCTATGGGATGTGGTGTCTAACAAGTTTGTTTGCGAGGTCGTAAGAAACTGTCTCCATGGCCAAATGAAGAGGAGCTTAAAAGAGGACTCAATCATAAGCTATGCCACAGAAGCTGCTGCCATGTTAGCAGAGTTGGCTATGGCTCGTGGAAGCAAAGACAACATCAGTGTCATTGTTATTCAGCTCAACACTGCTACAACTTGA 1026 0.5146 MHSTKSSTKEIERRYQNYRKKRKCPCDVAVVPTMEESRVTGDDKCIKVPAASASASASASASHGFISVIGRRRVMEDAVKVVPGLVAAEQSCGGYDFFAVYDGHGGTWVANSCRDRLHLLVAEEVRESAEKGLDWCEVMCECFNKMDREIGVGGGDGDADGGGNTMGSTASVVVVGKEEIVVANCGDSRAVLCRGGVAVPLSRDHKPDRPDEKERIEAAGGRVIDWNGNRVLGVLATSRSIGDHCMKPFVICQPETSVYERRDSDEFIVVASDGLWDVVSNKFVCEVVRNCLHGQMKRSLKEDSIISYATEAAAMLAELAMARGSKDNISVIVIQLNTATT 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01852 341 SMART PP2C_4 49 334 IPR001932 -
Cca06g01852 341 Gene3D - 56 340 IPR036457 -
Cca06g01852 341 ProSitePatterns PPM-type phosphatase domain signature. 97 105 IPR000222 GO:0043169
Cca06g01852 341 SUPERFAMILY PP2C-like 58 337 IPR036457 -
Cca06g01852 341 CDD PP2Cc 63 336 IPR001932 -
Cca06g01852 341 ProSiteProfiles PPM-type phosphatase domain profile. 62 336 IPR001932 -
Cca06g01852 341 PANTHER ALPHABET, ISOFORM E-RELATED 50 338 - -
Cca06g01852 341 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 50 338 - -
Cca06g01852 341 Pfam Protein phosphatase 2C 63 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01852 Cca-Chr6 33935943 33937574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01852 59 336 PP2C-type Phosphatase Gene Family AT2G29380 51.211 2.44e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01852 K14497 - gmx:100813248 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01852 06 33935943 33937574 Cca06g01852 06 33935943 33937574 ECH