Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01851 ATGGAAGGAATGCTTGAATTGAAAGACGGCACCGATATTGGGTCGTGTCTATCAAAGCTGATACTAACGAGTGGCACAAACACCCTTGACTCAATTTTCTCGAATTGCCCAACAAACGGCACAAGCAGCAACAACTCTGTTTTGGAAAGCTTTGGGTATGAGGCATTGGGCTCTTCCGTGTACCTCCGGCAGAGAGACATCCTACAGAAGTTCTACCAAGAAAGCCGAGGAAGCGGGTCGTATGTTGGGAGTTGGAGTTCATTCAGAAACGGTGTCTATacgaacacgaacacgaacacgaacacgaacacgaacCCCATCCCCTGCAAGAAAAAGCTGTACAGGGGAGTGAGGCAGAGGCACTGGGGGAAATGGGTGGCGGAAATTAGACTCCCACAGAACAGAATGCGAGTGTGGTTGGGCACTTACGACACTGCCGAAGCCGCTGCTTATGCGTACGACCGCGCCGCCTATAAGCTCCGTGGAGAGTACGCGCGTTTGAACTTCCCCAATCTGAAGGACCCCACCCAGCTAGGCTTGGGAGATTCCAGCAGATTGAAGGCTTTGAAGAGCTCCGTGGACGCCAAAATTCAAGCCATATGCCAAAAGGTGAAGAGGGAGAGAGCCAAAAAGAGTGCCGCCAAGAAGCTTAATTCCGACTCCCACAAAACCAACACTTGTTCCGCTTCCTCATCCTCCCCCTCCCCCTTTGATTGGGCCAACCACCTCTTCTCACCCTCCGTTTCCCACGACGCCATTTGGAAGGGGGAGAATTCCACCCACCCAACGGAGTTCCAACCTTGTTCTCTTGCCAGGTTGCCTTCCTTTGACCCCGACTTGATTTGGGAAGTTCTCGCCGTTTGA 864 0.5012 MEGMLELKDGTDIGSCLSKLILTSGTNTLDSIFSNCPTNGTSSNNSVLESFGYEALGSSVYLRQRDILQKFYQESRGSGSYVGSWSSFRNGVYTNTNTNTNTNTNPIPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTQLGLGDSSRLKALKSSVDAKIQAICQKVKRERAKKSAAKKLNSDSHKTNTCSASSSSPSPFDWANHLFSPSVSHDAIWKGENSTHPTEFQPCSLARLPSFDPDLIWEVLAV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01851 287 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Cca06g01851 287 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Cca06g01851 287 MobiDBLite consensus disorder prediction 219 235 - -
Cca06g01851 287 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Cca06g01851 287 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Cca06g01851 287 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Cca06g01851 287 MobiDBLite consensus disorder prediction 211 235 - -
Cca06g01851 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 235 - -
Cca06g01851 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 256 286 - -
Cca06g01851 287 Gene3D AP2/ERF domain 113 171 IPR036955 GO:0003700|GO:0006355
Cca06g01851 287 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Cca06g01851 287 CDD AP2 112 172 IPR001471 GO:0003700|GO:0006355
Cca06g01851 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 235 - -
Cca06g01851 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 256 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01851 Cca-Chr6 33920551 33922294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01851 11 286 AP2-EREBP Transcription Factor Family AT1G64380 47.826 3.26e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g01851 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01851 - - ccaj:109799834 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01851 06 33920551 33922294 Cca06g01851 06 33920551 33922294 ECH