Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01850 ATGAGCGAGCAAGAGGAGGATCTCATTTGCAGAATGTACAAGCTAGTTGGTGACAGGTGGAATCTGATAGCGGGTCGCATTCCAGGTCGTAAAGCAGAAGAAATAGAGAGATTTTGGATTATGAGACACGCTGATGCTTTTTCTGTTACAAGAAATCAAAAATTATCCCCTCATTGTGTTCCCTCTCCTTCAACCTAG 198 0.4293 MSEQEEDLICRMYKLVGDRWNLIAGRIPGRKAEEIERFWIMRHADAFSVTRNQKLSPHCVPSPST 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01850 65 Pfam Myb-like DNA-binding domain 2 40 IPR001005 -
Cca06g01850 65 CDD SANT 1 39 IPR001005 -
Cca06g01850 65 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 1 53 - -
Cca06g01850 65 SUPERFAMILY Homeodomain-like 2 40 IPR009057 -
Cca06g01850 65 Gene3D - 2 59 - -
Cca06g01850 65 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01850 Cca-Chr6 33899614 33901794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01850 1 39 MYB Transcription Factor Family AT5G52600 61.538 2.62e-13 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca06g01850 Myb_DNA-binding 7.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01850 K09422 - gmx:100814431 101.679