Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01849 ATGACGCCCAAATGGACGGAACAGGTTAGAGTGACGATTGAGAATGGCGTTGAAGGACCCCTCCACGATGGTTACAGCTGGAGAAAATATGGACAGAAAGACATCCTTAGTGCAAAATATCCCAGAAGCTATTATAGATGCACGTTCCGCAAAACTAAGGGATGCTGCGCCACGAAGCAAGTGCAGAGATCAGAAGAAGACCCCAATGCCTTTGACATAACATACCGAGGAAGCCACACCTGTTGTAAGGGAAACGACGCCGTTGTGACGCCAAAATCAGAAGACACAAAAGAGAAACCGCATAATAACGTTGAGTCTCACCATGCAAAGCCGTCACAAGACAGTTTAACTGTGAAAACGGAAAACATAACGGCACACCCATTGACTTCGTTTGGATGCATGACACAGGATAACCACCACACTTTATTTTCTTCTATGGTTCTAGAGAATGATCCTTTCTTGAGAAGCCTCTCCCAAACATCCTTGTTATCTACAAACACTGCTGAATCGAATTATTTTGTGCCTCCGTCTTTCCTCGTACATGAATTCGATGGCGTCTGTAACAAGCCATGCCCAGATTCTGATGTTGCCGGAATCGTTTCAGCAGATACATCAGCCACCAATTCTCCAATTTTCGATTTTAATTTCTCACTCCATTCAGTGGGAATTGATGATTCATATTTCCCCTTCAATGCCTGCGGGCTTTTATCCCAATTTCCTAAGTGCACTTGA 732 0.4426 MTPKWTEQVRVTIENGVEGPLHDGYSWRKYGQKDILSAKYPRSYYRCTFRKTKGCCATKQVQRSEEDPNAFDITYRGSHTCCKGNDAVVTPKSEDTKEKPHNNVESHHAKPSQDSLTVKTENITAHPLTSFGCMTQDNHHTLFSSMVLENDPFLRSLSQTSLLSTNTAESNYFVPPSFLVHEFDGVCNKPCPDSDVAGIVSADTSATNSPIFDFNFSLHSVGIDDSYFPFNACGLLSQFPKCT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01849 243 SMART WRKY_cls 21 83 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g01849 243 ProSiteProfiles WRKY domain profile. 16 79 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g01849 243 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 231 IPR044810 GO:0003700
Cca06g01849 243 Pfam WRKY DNA -binding domain 22 81 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g01849 243 Gene3D WRKY domain 6 76 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g01849 243 MobiDBLite consensus disorder prediction 86 115 - -
Cca06g01849 243 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 231 - -
Cca06g01849 243 SUPERFAMILY WRKY DNA-binding domain 20 81 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g01849 243 MobiDBLite consensus disorder prediction 90 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01849 Cca-Chr6 33886761 33887991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01849 1 229 WRKY Transcription Factor Family AT4G11070 38.889 8.38e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca06g01849 WRKY 5.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01849 - - gmx:100127370 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01849 06 33886761 33887991 Cca06g01849 06 33886761 33887991 ECH
Cca11g00608 11 9857490 9860278 Cca06g01849 06 33886761 33887991 ECH
Cca03g03140 03 52839418 52841144 Cca06g01849 06 33886761 33887991 ECH
Cca06g01849 06 33886761 33887991 Cca11g00608 11 9857490 9860278 ECH
Cca06g01849 06 33886761 33887991 Cca03g03140 03 52839418 52841144 ECH
Cca06g01849 06 33886761 33887991 Cca09g02503 09 50548229 50549513 PCT