Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01839 ATGACTGCGCCACCCACCAAGTACACTCACTACACCAAACACCTCCAACAACACCCACCCAACCACCCATACCCCAGACTCGTCAGAATAACCGTCACGGACACCGACGCCACCGACTCCTCCAGCGACGACGAACAACACCACCCTTCCACGCGCCAGAGGAGGTTCGTCCACCAGATTTCCATTCTCCAAAGCCAGGCCGTCGTTGCCAGGAAGCGGAGCCGAGACAGGGCCCCGCACGGTCGCCGGGTCTCCTCCGGAAGGAAGTTCCGGGGCGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCCGAGATACGAGACCCGTGGCGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCACAACACCCCCGCCATTAAGCTGCGTGGAGCCGACGCGCTGACGAATTTTGTAACGGCTCCCGGCAAGTGGGCGCTTAACGGCGAGGAAAGTCGGTCTGAGGTTGAAAACGAAAAGCAAAAGCTCTTGTCGCCTATTTCCGTGCTTCACTGTTGCTCCTTGTCCGAAGAAGGTGAGTCAGCATTTCCTCCGCTTCCGACGTTCGATTTTGGAGGCTCTTCTCCGGAGACTGCGTTCTTCCTGGACGATTGGCATGCTGCTTCTGAGGATTTCGGATTCAAAACTTGGAATACGGACACAAGTCCTGACTTCTTCCAAGACATCGATGATTTCTTTCTCTCCGATCCCCTTCTCGCTCTTTGA 909 0.4422 MTAPPTKYTHYTKHLQQHPPNHPYPRLVRITVTDTDATDSSSDDEQHHPSTRQRRFVHQISILQSQAVVARKRSRDRAPHGRRVSSGRKFRGVRQRPWGKWAAEIRDPWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHNTPAIKLRGADALTNFVTAPGKWALNGEESRSEVENEKQKLLSPISVLHCCSLSEEGESAFPPLPTFDFGGSSPETAFFLDDWHAASEDFGFKTWNTDTSPDFFQDIDDFFLSDPLLAL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01839 302 SUPERFAMILY DNA-binding domain 89 109 IPR016177 GO:0003677
Cca06g01839 302 ProSiteProfiles AP2/ERF domain profile. 89 200 IPR001471 GO:0003700|GO:0006355
Cca06g01839 302 PRINTS Ethylene responsive element binding protein signature 182 202 IPR001471 GO:0003700|GO:0006355
Cca06g01839 302 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Cca06g01839 302 MobiDBLite consensus disorder prediction 1 16 - -
Cca06g01839 302 Gene3D AP2/ERF domain 88 120 IPR036955 GO:0003700|GO:0006355
Cca06g01839 302 Coils Coil 182 182 - -
Cca06g01839 302 SMART rav1_2 89 206 IPR001471 GO:0003700|GO:0006355
Cca06g01839 302 MobiDBLite consensus disorder prediction 1 54 - -
Cca06g01839 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 110 - -
Cca06g01839 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 187 285 - -
Cca06g01839 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 7 110 - -
Cca06g01839 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 187 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01839 Cca-Chr6 33804338 33805246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01839 1 108 AP2-EREBP Transcription Factor Family AT4G27950 40.000 1.04e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01839 - - ccaj:109800576 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01839 06 33804338 33805246 Cca09g02490 09 50438948 50440363 PCT