Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01838 ATGGAACTCATGTTGTGGTTCATCATCTCCATTCTCATACTCTCCCAAGCAAAGGCAGCAGAAGAAGAAGACAAGGCAGCATTGCTTGAATTCGTGCAAAAGCTACCACCTTCAAGGCCTCTCAATTGGAACGGAACCTCTTCCCCATGCACCTCTTGGACAGGCGTAACCTGTGACCGACAAAGCTCACGTGTCATAGCCATTCACCTACCAGCCTTCGGATTCCACGGACCCATCCCTCCCAACACCATAAGCCGCCTCACGTGCCTCCAAACGTTGAGTCTCAGATCCAACTTCATCACCGCTCATTTCCCTTCCGATTTCTCCAATCTCAAAAACCTCACCTTTCTCTATCTCCACTTCAACAACTTCACCGGCCCCTTACCGGATTTCTCCCCCTGGACAAACCTCTCCGTCCTTGACCTCTCCAATAACCGATTCTCCGGCCACATTCCTCCGTCGCTCTCCACCTTGCCCCGCCTCGCCGCCGTCAACCTCGCCAACAACTCGCTCTCCGGGGAAATCCCACTCTCTCTCCAGAGGTTCCCAAAGGCCGCATTTTTAGGCAACAATCTTTCTCTTCAACTTCAACCCTCTCCGCATTCTGTCAAACACCGCCAAACGACGCTGCTTTCGGTTGTTGTCGCTGCTGGTGTCTTCGCTCTCGCGGGATTCCTTGTTTTTGTATTTCTGTGGTGCTCCAGGAAGAGAAAAGGGAATGTTTTTGCTCGGAAGTTGCACAAGGGGGACATGTCTCCGGAGAAACTGGTGTCGAGGGACTTGGATGTAAATAATAAGATTGTTTTCTTTGAGGGGTGTAGTTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTATTGGGGAAGGGGACGTTTGGTGCTGCTTACAAGGCTGCGCTAGAGGATGCTACCACGGTTGTTGTCAAGAGGTTGAAGGAGGTGGCTGTTGGAAGGAAGGACTTTGAGCACCACATGGAGGTTGTTGGAAATCTTAAACATGAGAATGTGGTTGAGCTCAAAGGGTATTACTACTCCAAAGACGAGAAACTCATGGTCTATGATTACTACACTCAGGGGAGCCTCTCTGCCTTGCTCCATGGTAAAAGAGGAGAGGAGAGGGTGGCTTTAGATTGGGATACTCGGATGAAAATTGCTTTGGGTGCTGCACGAGGCATTGCTCGCATCCATTTCGAGAACGGTGGTAAACTTGTACATGGCAATATCAGATCCTCAAATATCTTTCTAAATAGTAAGCAATATGGATGTGTCTCTGATCTTGGCCTGGCAACCATAATGAGCTCAGTTGCCATACCTATTTCAAGAGCTGCTGGATACAGAGCACCTGAAGTTACAGACACCAGAAAAGCGACACAGCCTTCTGATGTTTACAGCTTTGGTGTGGTGTTACTAGAGCTCCTGACTGGGAAATCCCCTGTCCACACAACTGGTGGCGATGAGATTGTCCACTTGGTGAGATGGGTTCATTCTGTTGTGAGAGAGGAGTGGACAGCTGAAGTATTTGACCTGGAGCTGATCAGGTATCCCAATATAGAGGAAGAGATGGTGGAAATGTTGCAGATAGCCATGTCATGCGTGGTAAGGGTTCCTGATCAGAGACCTAAGATATCAGAAGTTGTAAAAATGATACAAAATGTGAGGCAGATTGATATAGTGAATCAGCCATCATCTGAGAACCAAGTGGAAAGTGCAACACAGCCCCCTTTAACCCCTACACAAAAAGGAAATGAATGA 1761 0.4838 MELMLWFIISILILSQAKAAEEEDKAALLEFVQKLPPSRPLNWNGTSSPCTSWTGVTCDRQSSRVIAIHLPAFGFHGPIPPNTISRLTCLQTLSLRSNFITAHFPSDFSNLKNLTFLYLHFNNFTGPLPDFSPWTNLSVLDLSNNRFSGHIPPSLSTLPRLAAVNLANNSLSGEIPLSLQRFPKAAFLGNNLSLQLQPSPHSVKHRQTTLLSVVVAAGVFALAGFLVFVFLWCSRKRKGNVFARKLHKGDMSPEKLVSRDLDVNNKIVFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKAALEDATTVVVKRLKEVAVGRKDFEHHMEVVGNLKHENVVELKGYYYSKDEKLMVYDYYTQGSLSALLHGKRGEERVALDWDTRMKIALGAARGIARIHFENGGKLVHGNIRSSNIFLNSKQYGCVSDLGLATIMSSVAIPISRAAGYRAPEVTDTRKATQPSDVYSFGVVLLELLTGKSPVHTTGGDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIAMSCVVRVPDQRPKISEVVKMIQNVRQIDIVNQPSSENQVESATQPPLTPTQKGNE 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01838 586 Pfam Protein tyrosine and serine/threonine kinase 288 551 IPR001245 GO:0004672|GO:0006468
Cca06g01838 586 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Cca06g01838 586 PANTHER OS05G0588300 PROTEIN 14 566 - -
Cca06g01838 586 SUPERFAMILY L domain-like 34 185 - -
Cca06g01838 586 Gene3D Phosphorylase Kinase; domain 1 254 358 - -
Cca06g01838 586 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Cca06g01838 586 MobiDBLite consensus disorder prediction 563 586 - -
Cca06g01838 586 SUPERFAMILY Protein kinase-like (PK-like) 288 552 IPR011009 -
Cca06g01838 586 Gene3D Ribonuclease Inhibitor 20 200 IPR032675 -
Cca06g01838 586 ProSiteProfiles Leucine-rich repeat profile. 136 159 IPR001611 GO:0005515
Cca06g01838 586 PANTHER PROTEIN, PUTATIVE-RELATED 14 566 - -
Cca06g01838 586 Gene3D Transferase(Phosphotransferase) domain 1 360 575 - -
Cca06g01838 586 ProSiteProfiles Protein kinase domain profile. 284 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01838 Cca-Chr6 33788656 33792072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01838 13 582 Receptor kinase-like Gene Family AT4G23740 58.871 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca06g01838 PK_Tyr_Ser-Thr 1.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01838 - - gmx:100780435 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01838 06 33788656 33792072 Cca06g01838 06 33788656 33792072 ECH
Cca06g01838 06 33788656 33792072 Cca09g02489 09 50422245 50426487 PCT