Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01827 ATGGAACATAAAAACGTATTGTTATCGGCGCTGAGTGTTGGGGTGGGAGTGGGAGTGGGCCTTGGCTTGGCTTCTGGACAAAAACGGGGTGCTAATGACAATCCATCCTCAAACGCCGTTAATCCTGAGAACATGGAGCACGAAATGCTTCGACAAATTATCGATGGCAGAGATAGCAAGGTCACTTTTGATCAATTCCCTTATCATCTTAGAGAGCAGACACGGGTGTTGCTAACAAGTGCTGCCTATGTCCATTTGAAACATGCGGAGGTTTCTAAGTATACACGGAATCTTGCTCCGGCAAGCCGTACTATTCTTCTTTCAGGGCCAGCAGAACTTTACCAACAAGTGCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCAAAGTTGCTTCTGTTAGATCTATCTGACTTTTCATTGAAGATTCAAAGTAAATATGGTTCTGCCAACAAAGTATCGTCTTTCAAAAGGTCTACTTCAGAGTCAACTTTGGAGCGGTTATCTGACCTATTTGGTTTCCTTATCCTAAATCTGAATTTATACGTTCTCTTTTGCAGGGAGGCTGAAGGATCTTCTAATCCTCCTAAGCTTCGGAGGAATGCGTCTGCCTCTGCAAATATCAGTAACCTGACTTTGCAATGCAATCCCACAAATTCAGCTCCTCAGAAGCACATGACCAGCTGGCCTTTTGATGAAAAGCTTCTCATACAAACTATTTACAAGGTTCTACTTTATGTTTCAAAAACCTACCCCATTATTCTATATTTGCGGGATGCTGACAAGTTGTTGGATAGATCACAAAGGATATATAAACTATTCCAGACAATGCTGAATAAATTATCTGGACCAATTTTGATTCTTGGTTCACGAGTTCTGGATTCTGGTAGTGACTACAGAGAACTGGATGATAGACTCAATTCCCTCTTCCCCTACAACATAGAAATCCGCCCCCCAGAAGATGAATCTTATCTTGTTAGCTGGAAGGCTCAATTTGAAGAGGAGATGAAGATGATACAGATTCAGGATAACAGGAACCATATCATGGAAGTTCTTGCTGCCAATGATCTTGATTGTGATGACCTGGATTCTATCTGTGTGTCCGATACAATGGTTCTCAGTAACAATATAGAAGAGATTATTGTGTCAGCAATTTCTAATCATTTAATGACTAGCAAAGATCCTGAATACAGAAATGGCAAATTGGTTATTCCATGTAATAGTTTGTCCCATGCATTGACTATATTCCAGGAGGGGAAATCCGTTGAAAGAGATACATTAAAATTAGAAGCCCAATCAGTAACAACATCTGAGCCGAGAGAAGAAGCAGCTGTTGTGAAACCAGAAGCGAAGTCAGAGAATCCTGCTCCCGATGTAAAGGTCGAAGCCGATGCATCAAATTCAGTGACAAAAACTGACAGCGAAAATGCAGTTCCTGCACCCAAAGTTGAAGTTCCCCCAGATAACGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAACGAGATTGGTGTTAAATTCTCGGATGTGGGGGCCTTAGATGAGACCAAAGAATCACTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGATCTTTTCTGTGGGGGCCTTCTAAAGCCTTGTAAGGGAATATTGCTATTTGGACCTCCTGGCACAGGAAAGACAATGCTAGCAAAGGCCATTGCAAATGAAGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACAGTCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTTGCAGCCAAGGTCGCCCCAACTATTATATTTGTTGACGAGGTTGATAGTATGCTGGGCCAGAGAACCAGAGTTGGAGAGCACGAAGCCATGCGCAAAATAAAGAATGAGTTTATGACTCATTGGGATGGACTTATGACTAGTCCTGGAGAGCGCATCCTTGTTCTTGCCGCAACCAACAGGCCCTTTGATCTTGATGAGGCTATAATTAGGAGGTTTGAAAGGAGAATTATGGTAGGGATGCCGAGTGCGGAGAACAGGGAAAAGATTTTGAGGACTGTTTTGGCAAAAGAGAAGGTGGACGAGAAACTTGATTTTAAGGAAGTGGCAACTATAACAGAAGGATATAGCGGAAGTGATCTCAAGAACTTGTGCACAACTGCTGCTTACAGGCCTGTTAGAGAGTTGATTCAGCAAGAGAGACTAAGAACTCTGGAGAAAAAGCAGAAAGGTGGTGAAGGACAGAATAGCAATGTCCAAGATGCAGAAGAGGAAGCTCAACAGGAGAGAGTTATTACCCTTAGACCTTTGAACATGCGGGACTTCATAGAGGCAAAGAATCAGGTTTCAGCAAGCTACGCAGCTGAAGGGGCAGGAATGAGTGAGTTAAAGCAGTGGAATGAGTTGTATGGGGAAGGGGGTTCAAGGAAGAAAGAGCAATTATCTTACTTCCTATGA 2466 0.4274 MEHKNVLLSALSVGVGVGVGLGLASGQKRGANDNPSSNAVNPENMEHEMLRQIIDGRDSKVTFDQFPYHLREQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLSDFSLKIQSKYGSANKVSSFKRSTSESTLERLSDLFGFLILNLNLYVLFCREAEGSSNPPKLRRNASASANISNLTLQCNPTNSAPQKHMTSWPFDEKLLIQTIYKVLLYVSKTYPIILYLRDADKLLDRSQRIYKLFQTMLNKLSGPILILGSRVLDSGSDYRELDDRLNSLFPYNIEIRPPEDESYLVSWKAQFEEEMKMIQIQDNRNHIMEVLAANDLDCDDLDSICVSDTMVLSNNIEEIIVSAISNHLMTSKDPEYRNGKLVIPCNSLSHALTIFQEGKSVERDTLKLEAQSVTTSEPREEAAVVKPEAKSENPAPDVKVEADASNSVTKTDSENAVPAPKVEVPPDNEFEKRIRPEVIPANEIGVKFSDVGALDETKESLQELVMLPLRRPDLFCGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTVTSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTSPGERILVLAATNRPFDLDEAIIRRFERRIMVGMPSAENREKILRTVLAKEKVDEKLDFKEVATITEGYSGSDLKNLCTTAAYRPVRELIQQERLRTLEKKQKGGEGQNSNVQDAEEEAQQERVITLRPLNMRDFIEAKNQVSASYAAEGAGMSELKQWNELYGEGGSRKKEQLSYFL 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01827 821 Pfam AAA+ lid domain 700 736 IPR041569 -
Cca06g01827 821 SMART AAA_5 542 679 IPR003593 -
Cca06g01827 821 MobiDBLite consensus disorder prediction 441 457 - -
Cca06g01827 821 MobiDBLite consensus disorder prediction 431 485 - -
Cca06g01827 821 CDD AAA 544 676 - -
Cca06g01827 821 ProSitePatterns AAA-protein family signature. 649 668 IPR003960 GO:0005524|GO:0016887
Cca06g01827 821 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 821 - -
Cca06g01827 821 MobiDBLite consensus disorder prediction 742 763 - -
Cca06g01827 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 353 IPR027417 -
Cca06g01827 821 Pfam ATPase family associated with various cellular activities (AAA) 546 676 IPR003959 GO:0005524|GO:0016887
Cca06g01827 821 Gene3D - 505 789 IPR027417 -
Cca06g01827 821 Gene3D - 678 783 - -
Cca06g01827 821 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 821 - -
Cca06g01827 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 742 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01827 Cca-Chr6 33689350 33695068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01827 506 738 Calmodulin-binding Proteins AT3G56690 38.983 1.01e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01827 - - gmx:100808011 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01827 06 33689350 33695068 Cca06g01827 06 33689350 33695068 ECH