Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01820 ATGGCGAAGGAACTCGAGAAGAAAGCCAAAGAAGCATTCTTCGACGACGACTTCGCTCTCGCCGTTGATCTCTACTCTCAAGCCATTGAATTGGACCCCAACGACGCCCATCTATTCGCCGACAGGGCCCAAGCCCATATCAAGCTCAACGCTTTCACCGAAGCCATTTCCGATGCCAACAAAGCCATCCACTTAAACCCTTCCTTGTCCAAGGCCTATCTTCGCAAGGGCACCGCTTGTATGAAACTCGAAGAGTACCACACTGCCAAGGTTGCGCTTCAATGCGGTGCCGCTTTTGCCCAAGACGATTCCAGATTCGCCAACCTCATTCAAGAATGCGATCGCTGTATTGCAGAGGAATCAAGTGGTCTTTCCAGCACCTTATCATCAAATGGGTCTGTAACATCTGTACCGTCTGGTAATGTTTCCCATTTGAGCAATACAAATGATGGGGTGGCTAAAGAAGTTGAAGCAGACAGTTTGGTATCCCAAATCAATGAAGTTGCACTAAACAGACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAGCAAAAGATGTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTTACTATTGATGTTCCTGGCCAAGATGCCTATCATTTTCAACCTCGATTGTTTGGGAAGATAATACCCAATAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATCCGACTTGCGAAAGCTGAAGATATTAATTGGGCATCTCTGGAATATAGCAAGGATATTCTCCCCACAAAAATAAATAAGCCTATAGTTCAATCTGAAAGGCCTGCATACCCATCATCAAAACCAAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAGAAAGAGGAGAAAGAAGAAAAGCTTGACGGTGATGCTGGTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTTTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAGGAAGTGGGATCAAAGAAGGTGGAGGGTAGTCCTCCAGATGGTATGGAGTTGAAAAAATGGGAGTAG 1119 0.4388 MAKELEKKAKEAFFDDDFALAVDLYSQAIELDPNDAHLFADRAQAHIKLNAFTEAISDANKAIHLNPSLSKAYLRKGTACMKLEEYHTAKVALQCGAAFAQDDSRFANLIQECDRCIAEESSGLSSTLSSNGSVTSVPSGNVSHLSNTNDGVAKEVEADSLVSQINEVALNRPKYRHEYYQKPEEVVVTIFAKGISAKDVVVDFGEQILSVTIDVPGQDAYHFQPRLFGKIIPNNCRVEVLSTKIEIRLAKAEDINWASLEYSKDILPTKINKPIVQSERPAYPSSKPRTRDWDKLEAQVKKEEKEEKLDGDAGLNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPDGMELKKWE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01820 372 MobiDBLite consensus disorder prediction 352 372 - -
Cca06g01820 372 PANTHER PROTEIN SGT1 HOMOLOG A 1 372 - -
Cca06g01820 372 SMART tpr_5 36 69 IPR019734 GO:0005515
Cca06g01820 372 SMART tpr_5 2 35 IPR019734 GO:0005515
Cca06g01820 372 SMART tpr_5 70 103 IPR019734 GO:0005515
Cca06g01820 372 Gene3D - 173 264 IPR008978 -
Cca06g01820 372 ProSiteProfiles CS domain profile. 172 261 IPR007052 -
Cca06g01820 372 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Cca06g01820 372 Gene3D Tetratricopeptide repeat domain 1 123 IPR011990 GO:0005515
Cca06g01820 372 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Cca06g01820 372 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Cca06g01820 372 Pfam SGS domain 291 371 IPR007699 -
Cca06g01820 372 Pfam CS domain 176 251 IPR007052 -
Cca06g01820 372 ProSiteProfiles SGS domain profile. 282 372 IPR007699 -
Cca06g01820 372 CDD p23_CS_SGT1_like 178 261 - -
Cca06g01820 372 SUPERFAMILY HSP20-like chaperones 172 268 IPR008978 -
Cca06g01820 372 PANTHER PROTEIN SGT1 HOMOLOG 1 372 IPR044563 GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01820 Cca-Chr6 33617173 33621249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01820 1 94 U-box Gene Family AT3G07370 31.915 8.40e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01820 K12795 - gmx:100784022 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01820 06 33617173 33621249 Cca06g01820 06 33617173 33621249 ECH
Cca02g02207 02 42582005 42583476 Cca06g01820 06 33617173 33621249 ECH