Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01815 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGAGCCCTGAGGAAGATGAGAAACTCATCAGATACATTACCACTCATGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCGGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGCTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCAGGTAGAACTGACAACGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATCCGAAAGCCTTCGGTGACTTCATCAATGACCACTACACAAAGCGTTGATCACTCCCAATTCAACTACAATTCCAATCAACTAGATCACTTTGGCAACCAAGAAAACGTAACAGCAAAACCACCAATACAAGAAACCTTATTTTCCTCGACCTGCCCCTTATTTATGTTTGACACTAGTTCATTAGATCAAGGGATAACAACTACAGTAGACACTAATGTACGAGCCGAAATGTTCCATGAATCGGTGGGTTTGAGCACTGAAACGTGGAACATGAGCCACCACCAAGTGCATGCCCTTCCTCCTCAACCAGTAACAACCTTTAGTGCAGTTATGGATACAATGAATTATCTGCCACCATTGATAGAGAACGTGGAAAGCATGGTGCCAAATATGGAAGTACAGTCTTGTAGCATTGACGAAGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGGCAAGAGTTGAATATGGAGTGGGTGGAGAATCAACAACAATGTCCCAACTTTCTTTTCTGGGACAACGTTGAAGGACAACTTGGAGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAACCAATACACTTTCACCTTTTCCTTCTTCTTTTGAGTGTTGTACCACAGCTTCTTTCCGTCGCGGCTGCACCCTAGCAAACATGATCATTCCAGAGAAGAACCGTAGAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATCTGGCGAAGCACCCAGACATTGATGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAATCGAGGGAGTACGTGCGCGAAACATTTGCGTGGATGCACTATTACTGGTTTCTCACCAACGATGGAATTGAGTTCCTCAGGACTTACCTCAACCTTCCCTCAGAAATCGTCCCAGCCACTCTCAAGAAGCAGGCCAAGCCCGCTGGAAGACCATTTGGTGGCCCACCCGGTGATCGCCCAAGAGGCCCACCTCGCTTTGATGGAGAGAGGAGATTCGGTGGCGATCGTGATGGATACCGTGGAGGTCCCCGTGGGCCTGGTGGAGACTTTGGAGGAGACAAGGGTGGAGCTCCAGCAGATTACCGGCCTTCTTTTGGGGGTCCTGGCGGAAGGCCTGGCTTCGGTCGTGGTGCTGGTGGTTATGGAGGAGGAGCACCAACTAGTTCAAACATTCCTTAA 1551 0.472 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSMTTTQSVDHSQFNYNSNQLDHFGNQENVTAKPPIQETLFSSTCPLFMFDTSSLDQGITTTVDTNVRAEMFHESVGLSTETWNMSHHQVHALPPQPVTTFSAVMDTMNYLPPLIENVESMVPNMEVQSCSIDEEGEMALECLRRQELNMEWVENQQQCPNFLFWDNVEGQLGGEELAPNTSNIGTNTLSPFPSSFECCTTASFRRGCTLANMIIPEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAPTSSNIP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01815 516 MobiDBLite consensus disorder prediction 446 462 - -
Cca06g01815 516 CDD SANT 69 112 IPR001005 -
Cca06g01815 516 Gene3D - 6 66 - -
Cca06g01815 516 Gene3D - 335 438 IPR036388 -
Cca06g01815 516 Gene3D - 68 140 - -
Cca06g01815 516 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 256 515 - -
Cca06g01815 516 CDD SANT 17 61 IPR001005 -
Cca06g01815 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca06g01815 516 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca06g01815 516 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca06g01815 516 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Cca06g01815 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca06g01815 516 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca06g01815 516 PANTHER 40S RIBOSOMAL PROTEIN S10 256 515 IPR037447 -
Cca06g01815 516 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca06g01815 516 SMART sant 66 114 IPR001005 -
Cca06g01815 516 SMART sant 13 63 IPR001005 -
Cca06g01815 516 Pfam Plectin/S10 domain 337 428 IPR005326 -
Cca06g01815 516 MobiDBLite consensus disorder prediction 425 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01815 Cca-Chr6 33558897 33566918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01815 1 302 MYB Transcription Factor Family AT1G63910 51.667 6.05e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g01815 S10_plectin 3.5e-42 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01815 K09422 K02947 gmx:100803556 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01815 06 33558897 33566918 Cca06g01815 06 33558897 33566918 ECH
Cca06g01815 06 33558897 33566918 Cca09g02461 09 50080466 50083068 PCT