Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01809 ATGGCTCGACAAGTGTGTGAAGACAAATCATCATCTGGATTCTGCTACTCTGATGCATCATCGGGAAATCCAACGATGCTGGTGAACCAGATCCAAGGCTTTGTGTCGGACCCTGAGATGTTCAACCTCACCACTGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGCCATGTGGAGAAGTTTCATATCCAAACATGCTCCTTCCTCTTCCAAAACCATCAACGACTCTTCCACCACTTTCTACCACCACGACTACAACAACAACAAGCCTTCAGATTTCACTTCTGAAACAAGTGCTGAGAATTTAATCGTGCCGTGGCAAGACGAGGGCGACCACAACAACAACAGGTTACTCGTTGATGACTCTTCCTTAAGAGAAGGGTTCTTTGGAAAATCAGCGAGTGTTCAACAGCAACAGATTCTTGGCGTGAAGCAAAGCGACGTGGGAAAGGTGAAATCGTCGAAGAAGCAGTGGGAAGAGGAAAATAATAATCATAACAACAATAACGGTATCGGTTCCTCGAAGAAGGCTTCTCTCACCTCTCTAGAGTTCGTGGAGCTGCAGAAGAGAAAGACAAAGCTGCTTGCTATGCTGGAAGAGGTGGACAGAAGGTACAAGCACTACCGCAACCAGATGAGGAGCGTGGTGTCGTCGTTTGAAGCCGTAGCGGGGAACGGCGCCGCCACCGTGTACTCGGCGTTGGCGTTGAAAGCCATGTCAAGACATTTTAGGTGTTTGAAAGATGGGATTTTGGGGCAGATTCAAGCGTTGAGAAAAGCCATGGGAGAGAAAGACCCAATTGCACCAGGCACAACAAGGGGCGAAACACCAAGACTCAAAGTCATTGACCAAACACTGAGACAACAAAGGGCGTTTCAACAAATGAGCATGATGGAAACTCATCCATGGAGACCCCAACGTGGCCTTCCGGAGCGTGCCGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGTGACGTTGATAAACATATTTTAGCTCGCCAAACGGGTCTCTCGAGAGGCCAGGTTTCAAATTGGTTTATAAATGCAAGGGTGAGGCTATGGAAACCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCACGAAAACAACATAGCTTCCTCAGAGGGGGGTACCGATCAAGACAATGACATAAACCCAAATGTTCAAAACCCTCCACCTCCCTCATCACGATCAGAGGATCAAAAGCCATCACTTATTCGAATTGACTCGGAGTGTGCGTCCTCCATCGTCAATAACCACACCCCAGATAACAAAAACGACCCAAAGGAGTGCTTTGGGTCGGTGGAGCTTGATTTTTCATCCTACACGCACCACTCCTCGGGCATGGTTTCTTACGATCAAAATGGGACcaacaacaacaacaacgttaacaaGAGCGGGGTGTCTTTGACGCTAGGGTTACAACAACATGGGGTTAGTCTAGCGTTCCCGCCAGCAACACAGAGTTCACTGTACTACCCAAGGGATCAAATTGAAGATTGTCAACCAGTTCAGGTAAATCCATCATCATACATTCTTCATGTTACCCTACTTTTGAATTGGAATGCTCTTGGGTTCGATCCCGTTTTGATAGGAGCTTCCATTTGGCGGTGA 1653 0.4694 MARQVCEDKSSSGFCYSDASSGNPTMLVNQIQGFVSDPEMFNLTTGMEMIGFPKSDTNAAMWRSFISKHAPSSSKTINDSSTTFYHHDYNNNKPSDFTSETSAENLIVPWQDEGDHNNNRLLVDDSSLREGFFGKSASVQQQQILGVKQSDVGKVKSSKKQWEEENNNHNNNNGIGSSKKASLTSLEFVELQKRKTKLLAMLEEVDRRYKHYRNQMRSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGILGQIQALRKAMGEKDPIAPGTTRGETPRLKVIDQTLRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNIASSEGGTDQDNDINPNVQNPPPPSSRSEDQKPSLIRIDSECASSIVNNHTPDNKNDPKECFGSVELDFSSYTHHSSGMVSYDQNGTNNNNNVNKSGVSLTLGLQQHGVSLAFPPATQSSLYYPRDQIEDCQPVQVNPSSYILHVTLLLNWNALGFDPVLIGASIWR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01809 550 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 154 504 - -
Cca06g01809 550 Pfam Associated with HOX 154 254 IPR006563 -
Cca06g01809 550 SMART HOX_1 307 371 IPR001356 GO:0003677
Cca06g01809 550 Coils Coil 195 215 - -
Cca06g01809 550 MobiDBLite consensus disorder prediction 384 415 - -
Cca06g01809 550 CDD homeodomain 307 368 IPR001356 GO:0003677
Cca06g01809 550 SMART prehox3 126 256 IPR006563 -
Cca06g01809 550 Coils Coil 152 172 - -
Cca06g01809 550 ProSiteProfiles 'Homeobox' domain profile. 304 367 IPR001356 GO:0003677
Cca06g01809 550 MobiDBLite consensus disorder prediction 158 179 - -
Cca06g01809 550 Pfam Homeobox KN domain 324 363 IPR008422 GO:0003677|GO:0006355
Cca06g01809 550 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 9 113 - -
Cca06g01809 550 SUPERFAMILY Homeodomain-like 308 374 IPR009057 -
Cca06g01809 550 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 113 - -
Cca06g01809 550 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 154 504 - -
Cca06g01809 550 Gene3D - 310 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01809 Cca-Chr6 33505879 33509220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01809 145 522 Homeobox Transcription Factor Family AT5G41410 50.123 1.71e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca06g01809 POX 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01809 - - gmx:100803088 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01809 06 33505879 33509220 Cca06g01809 06 33505879 33509220 ECH
Cca06g01809 06 33505879 33509220 Cca09g02455 09 50010304 50014244 PCT