Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01807 ATGTATTTAAGGGAGAAggttatgggttatgggttatgggttatgggGGTGAGAGAATTAATTAAGATGGGATTTCCAGTGGGGTACACAGAGCTAGTGTTGCCCAAGGTGTTAGTGCAGGCGCTATCCGTGTTGGGCTTCATGAGGAAGCTCATAACCCTCCTCTTCTGCTACATGGGCCTCCTGCAGGCCGACATTGCGTGGCCCCAGTACCAGTATCAATCCATTCTGCCGGTGCTCAAGTTCTCGGAGGCGGAGGCGGAGGAGAGTTGCGCGGTCTGCTTGTTCGACTTCCAGGGAGAGGAGGAGATCAGACGGCTGCCCAACTGCCGGCACATATTCCACAGAGGCTGTCTGGACCGTTGGATGGGATACCATCAAAGAACGTGCCCCCTCTGCCGGACACCCTTCATACCCCACCCTATGGCTATGGCTATGCAACCTCCTTCACATTTCTATCATTAA 465 0.5032 MYLREKVMGYGLWVMGVRELIKMGFPVGYTELVLPKVLVQALSVLGFMRKLITLLFCYMGLLQADIAWPQYQYQSILPVLKFSEAEAEESCAVCLFDFQGEEEIRRLPNCRHIFHRGCLDRWMGYHQRTCPLCRTPFIPHPMAMAMQPPSHFYH 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01807 154 SMART ring_2 91 133 IPR001841 -
Cca06g01807 154 SUPERFAMILY RING/U-box 72 140 - -
Cca06g01807 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 139 IPR013083 -
Cca06g01807 154 PANTHER BRH1 RING FINGER PROTEIN 23 143 - -
Cca06g01807 154 CDD mRING-H2-C3H2C2D_ZSWM2 90 134 - -
Cca06g01807 154 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cca06g01807 154 Pfam Ring finger domain 90 134 IPR001841 -
Cca06g01807 154 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01807 Cca-Chr6 33471157 33472129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01807 23 140 C3H Transcription Factor Family AT1G63840 51.799 2.48e-42 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01807 K16281 - gmx:102665617 182.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01807 06 33471157 33472129 Cca06g01807 06 33471157 33472129 ECH
Cca06g01807 06 33471157 33472129 Cca09g02453 09 49974362 49974937 PCT