Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01805 ATGTTGGATTGTGTTTCAATGTCTTCTGATCTCTATACTAGTCTCGACCTTCTCTTCCTCTCAGCCTCTCCAATTCATGATGAGCTTCAAGGGAATAATTCTCTTCACCCCCTTACCCCTTCTTTCTGCTCTTTTTCTCCTCACCAAGACCACACCCTCCTTCATCCTAACACTAACACACAAGTCACAAGTGAGGAATGCCAAATGAGTGCCTACAATCACCACCCTCTTTCTCATGCTTATGAAACTGCATCAAACTTCATACATAGGAGCTTCAGCTGTAACTCTTTTGAGGGGAACACCTTCGAAGCTCACCCTCACACTTTCATGCAATGGCACTCCCCGGAAAACACTTTCTTCACTGGACAAATCAGGAGGGTCTGCAGTACAGGAGATTTGCAGAGCGCGAAAGCAACAGATGTGTGTCGAACGGAGGAAGGCAACTTGAAAGTAGGGCGTTATAGTGCCGAAGAAAGACAGCAGAAAATCTCAAAATACAGAGCCAAGAGAAGCCAGAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGAAAGACACTAGCCGACAATCGAACCCGCATACGTGGCAGATTTGCACGTAACGAGGAAATCAAAGTCTCTTCTTCAACTTCAACCATAGAAGAATGTGAAGACGAGTTCTGGGTTGAATTCATTGAAGGATTAAATGACCAAGTGATGGGTTAG 705 0.4454 MLDCVSMSSDLYTSLDLLFLSASPIHDELQGNNSLHPLTPSFCSFSPHQDHTLLHPNTNTQVTSEECQMSAYNHHPLSHAYETASNFIHRSFSCNSFEGNTFEAHPHTFMQWHSPENTFFTGQIRRVCSTGDLQSAKATDVCRTEEGNLKVGRYSAEERQQKISKYRAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARNEEIKVSSSTSTIEECEDEFWVEFIEGLNDQVMG 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01805 234 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 231 IPR045281 GO:0009909
Cca06g01805 234 PANTHER CCT MOTIF FAMILY PROTEIN 18 231 - -
Cca06g01805 234 Pfam CCT motif 159 201 IPR010402 GO:0005515
Cca06g01805 234 ProSiteProfiles CCT domain profile. 159 201 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01805 Cca-Chr6 33454244 33456286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01805 155 203 C2C2-CO-like Transcription Factor Family AT5G57660 48.980 9.48e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca06g01805 CCT 7.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01805 - - ccaj:109799839 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01805 06 33454244 33456286 Cca06g01805 06 33454244 33456286 ECH
Cca06g01805 06 33454244 33456286 Cca09g02451 09 49955262 49958479 PCT