Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01802 ATGCCATTATGGTGGGGAAAGTCTTCATCCAAAGAGGTAAAGAGGAAAGAAAACAGGCACTGTATTATGGATGCAATACAGAGGAAATTAAATAAATCAAGATGGTCTAGGAGACATCGTAGTGAAACTATCTCAGAGAAGGGATCTATATCCCTTGCGCCTTCAAGATCACCATCACCCACAGCACATGTTTATCGCTGTCAAAGTTTTGGAGAAAGGCCTCTTGCTCAGCCACTCCCGCTCCCGCTCCCACCCCCAAAGACGCACCTTCCTGCTGCCAATCATGCAAATTATGGAACTAGAATAACAGCAAAACTAGAAAGCAGTAGCACCAGAGGCTCAAAGTCATCTCTATATTTACCCCTACCAAAACCTGGTTGTGTTTCCAACAGGGGAGAACCTACGTATGCTGAGGAAGATATAGCCACTGCATCAGTTTCTAGTGGCAGCTCAATTGATAGCGATGACCAATGTGACTCACGTTTCCTTAGTCCTTTGGCATCTGACTGTGAAAATGGAAACCAAGCAATCATTAACAGTTCCGTCAGTGTGGTGCACAAGGATCAGTCACCCATTACTATCCAGAAAAACTTGAGTGTATCCTCAAAACCAGCTCCTCAATTGTACAATCATCAACTTCCATCTAACACACCCAAAGGAGCTTCTTTGCAACTTCCAAATCTGCAAATTGCTAGTTCAGGTGGTTTATGGAGTGCTCCAGGCAGTTCAATGTCAAGTCCTTCTAGAAGTCCACTGAGAAGATTTGGTTCCGAGCAAGTTTTGAACTCTGGATTCTGTACAGAAAAGCCATATCCAGATTTAACTTCTGGGCACTGCTCTAGTCCAGGTTCGGGCCATAATTCAGTTGTTGGGGATCTGACAGGGCAGATGTTCTGGCCACAGAGCAGGTGTAGCCCTGAGTGTTCTCCAATACCCAGTCCTGGAATGACAAGTCCTGGTTTCGGTTCCAGGATACACAGTGGGGCTGTCACTCCTCTTCATCCACGTGCTGGAGGCACCACAACAGAATCATCCACAAGACGTCCTGATGATGTAAAACAACAGACTTGCCGATTACGTCTTCCTTCAATAACAATCCCTAATCCCTCTCTGTTTTCTACAACCTATTCTGCAAATACTACTCCTTCAGCACCTCGTAGTCCTGGCATTGCAGAAAATCTAACAAGCCCAGGTTCATGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATATTGGTTTTAACAGTGATAGTGGCGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTGCAGATGATGCTAAATCAAGGGAAAGTGCTAAACAACTTGGCCAAGAAATTGCATTGCTAAGTCACCTGCGGCATCCAAATATAGTTCAATATTATGGATCTGAGACGGTAGATGACAAACTTTATATATACTTAGAGTATGTCTCTGGTGGGTCAATCTATAAGTTGCTTCAACAATATGGTCAGCTTGGTGAAATTGCTATTCGTAATTATACTCGGCAAATTGTGTTGGGTCTAGCTTATTTACATGCTAAAAACACTGTCCATAGAGACATTAAAGGAGCAAACATATTGGTGGATCCAAATGGGAGGGTAAAATTGGCGGATTTTGGTATGGCAAAGCATATAGGCGGGCAGTCCTGTCCATTATCTTCCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTAATAAAAAATTCAGGTGGTTGTAATCTTGCTGTTGATATATGGAGCCTGGGCTGCACTGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAATATGAAGGGGTTGCAGCTATGTTTAAGATTGGAAACAGCAAGGAACTTCCTGCAATACCAGATCATCTATCAGAAGATGGGAAAGATTTTGTCAGGCAATGCTTGCAAAGGAATCCACAGCGTCGTCCCTCCGCTGCTCAACTTCTTCTGCATCCATTTGTTAAAAGAGTCACACTGGAAAGACCTATTTTGTCTGCTGATCCTTTAGAATCAAATCCTGCTTTTGTAAATGCTATGAGATCTCTGGATATTGAACCTGCAAAACATAATTTAGGCTCAGTTTCAGAAGCAGCTGGCACACATCTGTCTAGAATCTCGAGAACCGGTTCAGGGCTAAGTGATGCCCATACACCAAGGAACATATCACATCCCGTGTCTCCTACTGGAAGCCCACTTTTGCTATCTAGTTCAAGGCATGCGAGTGGAAGGCTGTCCCCATCTCCCATATCTAGTCCTCGTACTGCATCTGGCTCATCTACACCGCTGACTAGTGGCATTGGTGCAGTCCCTTTTCATCAAACAAGACAGCCGGCAATCTCCTATGAAGGTGTCAATGTGATCCAAAGGCCTCAAAATGCTCGTTATCAGGAGCCAAAGCACGATCCACTTTGGGGGATTCCGCGAAGTACTTATGCTTGCCCGGATATAGTTTCATCTAATAATGATGCTCTAGGAAACTATAACAGGAGGGTTATCCAGGGATTACCTAGAGAATTTTGTGATGGGGATTTGCAGCAGCTGTTAAATGATCGTGTAAGACTAAATTTCGGTCATAGATCTTAA 2592 0.4417 MPLWWGKSSSKEVKRKENRHCIMDAIQRKLNKSRWSRRHRSETISEKGSISLAPSRSPSPTAHVYRCQSFGERPLAQPLPLPLPPPKTHLPAANHANYGTRITAKLESSSTRGSKSSLYLPLPKPGCVSNRGEPTYAEEDIATASVSSGSSIDSDDQCDSRFLSPLASDCENGNQAIINSSVSVVHKDQSPITIQKNLSVSSKPAPQLYNHQLPSNTPKGASLQLPNLQIASSGGLWSAPGSSMSSPSRSPLRRFGSEQVLNSGFCTEKPYPDLTSGHCSSPGSGHNSVVGDLTGQMFWPQSRCSPECSPIPSPGMTSPGFGSRIHSGAVTPLHPRAGGTTTESSTRRPDDVKQQTCRLRLPSITIPNPSLFSTTYSANTTPSAPRSPGIAENLTSPGSCWKKGQLLGRGTFGHVYIGFNSDSGEMCAMKEVTLFADDAKSRESAKQLGQEIALLSHLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQQYGQLGEIAIRNYTRQIVLGLAYLHAKNTVHRDIKGANILVDPNGRVKLADFGMAKHIGGQSCPLSSKGSPYWMAPEVIKNSGGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPAIPDHLSEDGKDFVRQCLQRNPQRRPSAAQLLLHPFVKRVTLERPILSADPLESNPAFVNAMRSLDIEPAKHNLGSVSEAAGTHLSRISRTGSGLSDAHTPRNISHPVSPTGSPLLLSSSRHASGRLSPSPISSPRTASGSSTPLTSGIGAVPFHQTRQPAISYEGVNVIQRPQNARYQEPKHDPLWGIPRSTYACPDIVSSNNDALGNYNRRVIQGLPREFCDGDLQQLLNDRVRLNFGHRS 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01802 863 Gene3D Transferase(Phosphotransferase) domain 1 400 680 - -
Cca06g01802 863 SUPERFAMILY Protein kinase-like (PK-like) 400 737 IPR011009 -
Cca06g01802 863 CDD STKc_MEKK1_plant 401 657 - -
Cca06g01802 863 Pfam Protein kinase domain 402 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01802 863 SMART serkin_6 401 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01802 863 MobiDBLite consensus disorder prediction 46 63 - -
Cca06g01802 863 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 799 - -
Cca06g01802 863 ProSiteProfiles Protein kinase domain profile. 401 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01802 863 MobiDBLite consensus disorder prediction 32 63 - -
Cca06g01802 863 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 799 - -
Cca06g01802 863 ProSitePatterns Protein kinases ATP-binding region signature. 407 430 IPR017441 GO:0005524
Cca06g01802 863 MobiDBLite consensus disorder prediction 709 771 - -
Cca06g01802 863 MobiDBLite consensus disorder prediction 329 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01802 Cca-Chr6 33402068 33410101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01802 1 784 MAP Kinase Kinase Kinase AT1G63700 61.214 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca06g01802 Pkinase 5.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01802 K20717 - gmx:100777350 1315.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01802 06 33402068 33410101 Cca06g01802 06 33402068 33410101 ECH
Cca02g02232 02 42850153 42861159 Cca06g01802 06 33402068 33410101 ECH