Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01801 ATGGAGAGGGAGGAAGATGTTAAGGTTGGAGCACAGAAATTCTCAGAGAGGCATGCGTTGGGAACAGGAGCTGGGGGTGACAAGGACTACAGAGAGGCACCAGCAGCACCCTTGTTTGAGGGAGGGGAGCTCAAGTCATGGTCTTTTTACAGAGCTGGGATTGCTGAGTTTGTGGCCACATTCTTGTTCCTCTACATCACTATCTTGACTGTCATGGGTGTCAACAGGTCACCCAACAAGTGCTCCTCTGTTGGCATTCAAGGAATTGCATGGGCTTTTGGCGGCATGATCTTTGCCCTTGTCTACTGCACAGCTGGAATATCAGGTGGACACATAAATCCGGCAGTGACGTTCGGTTTGTTCTTGGCTAGGAAGCTGTCGCTGACAAGAGCTGTGTTCTACATTGTGATGCAGTGCCTTGGAGCTATCTGTGGTGCTGCTGTGGTGAAGGGGTTTGAGGGTAATGCAAGGTACCAGTTGTTCAAAGGTGGAGCCAATTTTGTGAGTCATGGATACACCAAAGGGGATGGTCTTGGTGCTGAGATTGTTGGCACCTTTCTCCTTGTTTACACTGTTTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGATTTTGGCCCCTCTGCCAATAGGGTTTGCTGTGTTTTTGGTCCACTTGGCAACCATTCCCATCACAGGAACCGGCATTAACCCTGCTAGGAGTCTTGGTGCTGCTATAGTATACAACCGAGACCATGCTTGGGATCACCATTGGATTTTCTGGGTTGGACCTTTCACTGGAGCTGCTCTTGCTGCTTTATATCACCAGATAGTCATACGAGCAATTCCTTTCAAGACAAGGGGTTAA 861 0.4925 MEREEDVKVGAQKFSERHALGTGAGGDKDYREAPAAPLFEGGELKSWSFYRAGIAEFVATFLFLYITILTVMGVNRSPNKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAAVVKGFEGNARYQLFKGGANFVSHGYTKGDGLGAEIVGTFLLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRDHAWDHHWIFWVGPFTGAALAALYHQIVIRAIPFKTRG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01801 286 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Cca06g01801 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
Cca06g01801 286 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 PANTHER AQUAPORIN PIP1-6 3 285 - -
Cca06g01801 286 CDD MIP 51 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 TIGRFAM MIP: MIP family channel proteins 55 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 Pfam Major intrinsic protein 43 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca06g01801 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 285 IPR034294 -
Cca06g01801 286 Gene3D Glycerol uptake facilitator protein. 36 284 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01801 Cca-Chr6 33398856 33400403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01801 3 285 Major Intrinsic Protein MIP AT3G61430 83.392 1.16e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01801 K09872 - gmx:100796833 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01801 06 33398856 33400403 Cca06g01801 06 33398856 33400403 ECH