Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01797 ATGGGGAAGGGAAAACCTAGGGCAGTGGAGAAAGGTGTGGTAGGACCTAGTTTGAGTGTTACGTCCTCCACTATACCTGCGGGACCTGTGTATTACCCTACTGAGGACGAATTCAAGGATCCTTTAGAGTATATTTACAAGATTAGACCCGATGCTGAGCCTTATGGAATTTGTAAGATTATGGGGAAGGGAAAACCTAGGGCAGTGGAGAAAGGTGTGGTAGGACCTAGTTTGAGTGTTACGTCCTCCACTATACCTGCGGGACCTGTGTATTACCCTACTGAGGACGAATTCAAGGATCCTTTAGAGTATATTTACAAGATTAGACCCGATGCTGAGCCTTATGGAATTTGTAAGATTTCTCAGGCCATTCACAAGCTCCAGGCACGCCCTGCTGCCTCAGACTCCAAGACCTTTGACTTGGAGTACTCTAGGTTTTTGAGGGAGCAGTGTGGTAAGAAGTCCAGGAAGAGGGTTGTGTTCGAGGGCGAGGAGCTGGACTTGTGTAAGCTGTTCAATGCCGTGAAGCGCTTTGGCGGGTATGATAAGGTTGTTGATGGGAAGAAATGGGGGGATGTTGCTCGGTTTGTGAGGTCTGGGAAGATTTCGGATTGTGCTAAGCATGTGTTGTGTCAGTTGTACAGGGAGCATTTGTATGATTATGAGAATTTTATTAATAGGATGAATCAAGGGACGGCTCAGAGTTGTAAGAAAGGCGTGCATGAGGACCACCACAAGAGTGATCATGGAGTGCAAGCTGTGGTATCCAAGAGGAATCACAAGAGTGTGGATGGTTCAAAACGGAAGGATAGCAAAGTGCAAGAGGAGCATGATCAGATTTGTGAGCAATGTAAAAGTGGTTTGCACGGGGAAGTCATGCTTTTGTGTGACAGGTGTGATAAGGGCTGGCATACTTATTGTCTTTCCCCACCACTGAAGCAAGTTCCTCCGGGGAATTGGTATTGTTTCAACTGCTTGAATTCTGACAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCAATATTCATTGGAAGCTTTTAGACGCATAGCGGATCGCTCAAGGAGGAGATGGTTTGGATCAGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAATTTTGGGATATTGTGGAGGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGATTTGGATACGTCTGTTTATGGGAGTGGTTTCCCACGTGAAACTGACCAGAAACCACAATCTATTGATGACAAAGTATGGCAAGAATACTCAACTAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTACGAGCTGTTCATCACAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCTTTTTGCTGGCATTTTGAAGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAATCAGGCCAGTACTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTCACTATGCTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCCAGATCTTATCATGGAGGTTTCAATCTTGGTTTGAATTGTGCAGAAGCAGTCAATTTTGCTCCTGCTGACTGGCTACCATATGGTGCTTTTGGAGCTGATCTCTATCAACGGTATCATAAAACTGCTGTCTTGTCTCATGACGAGCTTCTTTGTGTAGTTGCCCAGTATGGTGATGTTGATGGCAGAGTGTCTTCGTATTTAAAGAAGGAATTGTTGAGAATATCGGATAAAGAAAAATCTTGGAGAGAGAAACTTTGGAAAAGTGGTATTATCAAGTCTTCTCGCATGACTCCTCGAAAATGTCCCCAATATGTGGGAACTGAAGAAGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCGGTTGTATGTGGTTGCAGGCCATCTACTTTTGTTTGTTTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTAGAACTACGACTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTGTCAATTTGTCTGGACAAATATACTCCCAAGGACAAAGCTGATTGTAAAAATGTGAAAAGGCAGTCTTCATGTCTTAGTGCTTTGACCAAAAAGGTGAAAGGTGGCTCCATTTCTTTTGCCCAACTTGCTGAAGCATGGCTTCAGCAATCACGTACTATTCTTCAAAACGTTTTTTTGCATGCTGCATTTGTTACTGCATTAAGCGAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTATGTTCGAGACATGGTAAAGAATTTGATTGAAGCTCAGAAATGGGCAGAAGGGATAAGAGATTGCTTTACAAAAATTGAGTTGTGTCGTCGGGACTTGAGTGTCAAGAAAGTTAATTTAGAATTCGTTGATGAGTTACTGAGATTTAGTCCTGCACCATGCAATGAGCCCCTTTATCATAAATTGAAGGACTATGCAGAGGAAGCAAGGTTGTTAATTCAGGAGATTGATACTTCTTGGTCAATGTGTTCAAATATGTCTGAGTTGGAACTTTTATACTCCAAAGCTTGTGGCTTACCCATCCATGTGAAAGAAAGTAAGAAATTAGAAGCAAAAATTTCTTCAATCAAGGCATGGCTGGATAGCGTCAGAAAGTGCATCTCAGCAAGTCAGCCTGCTGCACTACACATTGATGTTCTTTACAAGTTAAAAGCAGAGTTTGTGGATCTTCAAGTTCAACTCCCGGAGATAGATTTGCTTCAGAATCTATTAAGTCAAGCTGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGGCACTTTTGCAGTTGATGTAGCAGAGCTGAAGCTTTTAAGGCAATATCATTCAGATGCTGTTTCATGGGTTTCCCACTTTAATGATGTTTTAGGGAGAGTTCACACACTGGAAGATCAACATAATGCAGTTGATGAATTGAGGAGCATTTTTGAACAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTACCATTAGTTGAGATTGAGCTGAAGAAGGCTAATTGTCGGGAAAGGGCTGTGAAGGCACATGATTTGAAGATGCCTTTGGATTTCATTCAGCAACTGTTGAAGGAGGCCACTATGCTTCAAATTGAGGGAGAGAAACAATTTGTCAATTTATCTCATGTGCTTGCTGTTGCGATGCCTTGGGAGGAAAGGGCTAGAGAGATGCTTTCACATGAAGCTTCTATTTCGGACTTTGAGGACATGATCAGAGCTTCTGAAAATATATTTGTTATTCTTCCTTCACTTAATGATGTCAAAGATGCATTATCAGAAGCTAATTCCTGGTTACGGAATTCAAAGCCATATTTAGTCTCTTCTCTGTGTGCTTCAAATTGTGTGCGGAAAGTTGAGGACTTGCAGATGTTGGTTTCTCAATCaaagcatcttaaagtatctttggaagaaagagggtcacttgcattaATTTTGAAGGACTGCAGAATGTGGGAGTATAAAGCATGTTCTCTATTAGATGATGCTTGGTGCTTATTTGAACTGGATGACTTTCTAAATGAAATAAACAATGGTTTAATATGTAAAGTGGATGATTTGATTGCACGAATCCAATATGCCATAACATCTGGTGTATCACTTGGTTTTGACTTCAATGAGATTTCAAAACTCCAAGCATGTTGTTCTACACTGCAATGGTGCAAAAGAGCCCTGTCCTTCTGCAATTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCATCTCTTTCTGGTGCTCTGTTGAAAGTATTGATTGATGGATTTGAATGGCTTAGAAAAGCATTAGAGGCAGTTTCTGGACCTCGCAATTCTAGAAGATGCAAATTGACTGACGTACAAGATATTATTACCGATTATCAGACTATTAATATGACCTTTACAGCAGTAAATTGTCAACTTGAAGATGCCATTGGAAAACATAAGTTGTGGAAAGAGCAAGTGCATCAATTTTTTGGTCTAAGTTCTAGAGATCGATCTTGGTCTTCAATATTGCAGCTCAAGGTACATGGAGATACCATTGCCTTCAGTTGCCCCGAACTGGATTTGGTTTTATCTGAAGTTGAGAAGGTGGAAAACTGGAAGAAAAGATGCATGGATAAACTAGGAACACTAGTCCAAAATGGAAAGTCGCCACTTCATGCACTGGAGAAGATAAAACAGACTCTGGATAGATCGTTGTTTATACATGAAAAATTGCAAGATCTGAAGGAACAACACCTATGTATCTGCTGCTTTGTTGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATTTGCGGTGTGTTGGACTAACAGAGAAAGACGTACAAATTGGAAACTACACGTGCCCCTATTGTGAAATTTTGAGGGGTGATTTCCATTATCAGAATGGAGGTGCCCTCCTGAGGTTTAGAAAGAAGCGAATTGAATTGAAAGTTCTTACTGAACTCATGTCTGATGCTGAACATTTCTGTTTATGGATTGATGAAAGAGATCTTTTGAGTCAACTTGTTGAGAAAGCCCTTTCATGCAAATCTTGCTTGAGAGAAATTGTGAAATTTGCATCAGCTAATGTTGACGAAGATATTAGTGTTGTCTCTGAAAAATTGGCCACTGCTGTCAAGGCTAGCAAAGTGGCTGTTGTCTATGATCAGAATGATACTCGTGACCTTGAGATGGCTTTAGCAAAAAACTTTTGGAAAACTCAAGTGAATAGATTGTTAAATGGTGTACCTAAGCCCACTATCCAACAAATTCAGAAGCATCTGAAGGAGGGACTGGCTATGGACATATCACCTGAAGATCATTATATGTTGAAACTTACAAATGTGAATTGCTTGGGTTCGCAATGGGCAGAACTAGCCAAAAAGGTGGCAACCGATTCTGGGGCACTCAGCCTGGATAAAGTTTTTGAAATTATAGTGGAAGGTGAAAACTTGCCGGTTGATGTGAACGAGGAACTAAGGATATTAAGGGCACGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCACAAAGGATGATTGCATGTTATCATTGTAATGAGTGGTATCACTTTGATTGCATGAAATTGCCATGCACAAGAGAGATCTACATTTGTCCCGCATGTAACCCGTGTACAGAAGGAATTCCTTCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCATCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGACGTACCCAGTCTCACTTGCAACATGTTCGCAACCAGGAATGAAGATAGTGAGTTTAGGTATTCGGGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGTTAAGAAACGTGTTGAACTTCGAAAACATAACTCGACCTCGTTGTTGAGTGCGACGCCGGTGCTGTACCGAACGAAGAGATCTTCAACAGATGAAATGAGGTACATAAAGCCCTTGCAATTGTTTCGTGATTTGATGAATACAACCCAAAACCAACGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACAAAATTGCTTCACCTTTCAGCGTTCTCGTCAGGAAGAAGACAAATATTTGTTTAATGGCTTCTGATTTTGAGAGTCTGATCTCTAAATATTCCTTAAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCGGCTGTCTGCTGATGCTGTGCAAGTGAAGCTCTTCATTGATCTCCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATATTGGAATGAGTGCTTCACGTCAAAGAATGTGGAATTGCTGCTAAAGCCTTTGAACTTAAATCATCCATCTCTGTCCAAGACTATGCTAGACAAGTTTGCTGCAGTAGGAATACTTCAGGGGTACCTGGATTTTGTCAACAGGAAAACGAAGCTGATAGAAAAGGATTAA 6159 0.4088 MGKGKPRAVEKGVVGPSLSVTSSTIPAGPVYYPTEDEFKDPLEYIYKIRPDAEPYGICKIMGKGKPRAVEKGVVGPSLSVTSSTIPAGPVYYPTEDEFKDPLEYIYKIRPDAEPYGICKISQAIHKLQARPAASDSKTFDLEYSRFLREQCGKKSRKRVVFEGEELDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVRSGKISDCAKHVLCQLYREHLYDYENFINRMNQGTAQSCKKGVHEDHHKSDHGVQAVVSKRNHKSVDGSKRKDSKVQEEHDQICEQCKSGLHGEVMLLCDRCDKGWHTYCLSPPLKQVPPGNWYCFNCLNSDRDSFGFVPGKQYSLEAFRRIADRSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVYGSGFPRETDQKPQSIDDKVWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGNQASTFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHDELLCVVAQYGDVDGRVSSYLKKELLRISDKEKSWREKLWKSGIIKSSRMTPRKCPQYVGTEEDPACIICQQYLYLSAVVCGCRPSTFVCLEHWEHLCECKTVELRLLYRHSLAELYDLSICLDKYTPKDKADCKNVKRQSSCLSALTKKVKGGSISFAQLAEAWLQQSRTILQNVFLHAAFVTALSEAEQFLWAGSEMDYVRDMVKNLIEAQKWAEGIRDCFTKIELCRRDLSVKKVNLEFVDELLRFSPAPCNEPLYHKLKDYAEEARLLIQEIDTSWSMCSNMSELELLYSKACGLPIHVKESKKLEAKISSIKAWLDSVRKCISASQPAALHIDVLYKLKAEFVDLQVQLPEIDLLQNLLSQAESCSAQCHDMLEGPMNLKNVGLLLKEWGTFAVDVAELKLLRQYHSDAVSWVSHFNDVLGRVHTLEDQHNAVDELRSIFEQGLSLKIQVDELPLVEIELKKANCRERAVKAHDLKMPLDFIQQLLKEATMLQIEGEKQFVNLSHVLAVAMPWEERAREMLSHEASISDFEDMIRASENIFVILPSLNDVKDALSEANSWLRNSKPYLVSSLCASNCVRKVEDLQMLVSQSKHLKVSLEERGSLALILKDCRMWEYKACSLLDDAWCLFELDDFLNEINNGLICKVDDLIARIQYAITSGVSLGFDFNEISKLQACCSTLQWCKRALSFCNCSPSLEDVLEVAEGLSHSSLSGALLKVLIDGFEWLRKALEAVSGPRNSRRCKLTDVQDIITDYQTINMTFTAVNCQLEDAIGKHKLWKEQVHQFFGLSSRDRSWSSILQLKVHGDTIAFSCPELDLVLSEVEKVENWKKRCMDKLGTLVQNGKSPLHALEKIKQTLDRSLFIHEKLQDLKEQHLCICCFVDSEDQEFLTCSTCMDCYHLRCVGLTEKDVQIGNYTCPYCEILRGDFHYQNGGALLRFRKKRIELKVLTELMSDAEHFCLWIDERDLLSQLVEKALSCKSCLREIVKFASANVDEDISVVSEKLATAVKASKVAVVYDQNDTRDLEMALAKNFWKTQVNRLLNGVPKPTIQQIQKHLKEGLAMDISPEDHYMLKLTNVNCLGSQWAELAKKVATDSGALSLDKVFEIIVEGENLPVDVNEELRILRARCMLYCICRKPFDPQRMIACYHCNEWYHFDCMKLPCTREIYICPACNPCTEGIPSNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVPSLTCNMFATRNEDSEFRYSGGIECLRWQNRKPFRRAVKKRVELRKHNSTSLLSATPVLYRTKRSSTDEMRYIKPLQLFRDLMNTTQNQRGRLLGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNICLMASDFESLISKYSLKGFVIGIPFDKHRLSADAVQVKLFIDLLCRTKMLEGVKYTYWNECFTSKNVELLLKPLNLNHPSLSKTMLDKFAAVGILQGYLDFVNRKTKLIEKD 2052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01797 2052 MobiDBLite consensus disorder prediction 1786 1800 - -
Cca06g01797 2052 SMART ARID_2 130 222 - -
Cca06g01797 2052 Pfam Holliday junction resolvase 1904 2040 IPR005227 GO:0006364
Cca06g01797 2052 CDD YqgF 1905 2040 IPR005227 GO:0006364
Cca06g01797 2052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1463 1532 IPR013083 -
Cca06g01797 2052 SMART JmjN_1 27 66 IPR003349 -
Cca06g01797 2052 SMART JmjN_1 87 121 IPR003349 -
Cca06g01797 2052 ProSiteProfiles Zinc finger PHD-type profile. 278 328 IPR019787 -
Cca06g01797 2052 Pfam C5HC2 zinc finger 661 712 IPR004198 -
Cca06g01797 2052 SUPERFAMILY Ribonuclease H-like 1903 2042 IPR012337 -
Cca06g01797 2052 Pfam jmjN domain 89 120 IPR003349 -
Cca06g01797 2052 Pfam jmjN domain 29 60 IPR003349 -
Cca06g01797 2052 SMART bright_3 134 227 IPR001606 GO:0003677
Cca06g01797 2052 Gene3D Cupin 72 568 - -
Cca06g01797 2052 ProSitePatterns Zinc finger PHD-type signature. 281 325 IPR019786 -
Cca06g01797 2052 CDD PHD_RSF1 281 325 - -
Cca06g01797 2052 Pfam PLU-1-like protein 1174 1431 IPR013637 -
Cca06g01797 2052 Pfam PLU-1-like protein 927 1073 IPR013637 -
Cca06g01797 2052 Pfam PLU-1-like protein 978 1217 IPR013637 -
Cca06g01797 2052 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Cca06g01797 2052 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 85 1104 - -
Cca06g01797 2052 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 25 61 - -
Cca06g01797 2052 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Cca06g01797 2052 SUPERFAMILY FYVE/PHD zinc finger 1448 1521 IPR011011 -
Cca06g01797 2052 ProSitePatterns Zinc finger PHD-type signature. 1475 1519 IPR019786 -
Cca06g01797 2052 ProSitePatterns Zinc finger PHD-type signature. 1732 1772 IPR019786 -
Cca06g01797 2052 ProSiteProfiles JmjC domain profile. 418 584 IPR003347 -
Cca06g01797 2052 Gene3D Cupin 13 68 - -
Cca06g01797 2052 SUPERFAMILY ARID-like 119 236 IPR036431 GO:0003677
Cca06g01797 2052 Pfam JmjC domain, hydroxylase 451 567 IPR003347 -
Cca06g01797 2052 MobiDBLite consensus disorder prediction 1786 1812 - -
Cca06g01797 2052 ProSiteProfiles ARID domain profile. 133 226 IPR001606 GO:0003677
Cca06g01797 2052 Hamap Putative pre-16S rRNA nuclease [yqgF]. 1903 2043 IPR005227 GO:0006364
Cca06g01797 2052 Pfam PHD-finger 280 327 IPR019787 -
Cca06g01797 2052 Gene3D - 1902 2049 IPR037027 GO:0006139
Cca06g01797 2052 Gene3D - 121 237 IPR036431 GO:0003677
Cca06g01797 2052 MobiDBLite consensus disorder prediction 237 274 - -
Cca06g01797 2052 SMART PHD_3 1731 1773 IPR001965 -
Cca06g01797 2052 SMART PHD_3 1474 1520 IPR001965 -
Cca06g01797 2052 SMART PHD_3 280 326 IPR001965 -
Cca06g01797 2052 Pfam ARID/BRIGHT DNA binding domain 143 222 IPR001606 GO:0003677
Cca06g01797 2052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1718 1774 IPR013083 -
Cca06g01797 2052 SUPERFAMILY FYVE/PHD zinc finger 1726 1777 IPR011011 -
Cca06g01797 2052 CDD ARID 135 222 - -
Cca06g01797 2052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 331 IPR013083 -
Cca06g01797 2052 PANTHER LYSINE-SPECIFIC DEMETHYLASE 85 1104 - -
Cca06g01797 2052 PANTHER LYSINE-SPECIFIC DEMETHYLASE 25 61 - -
Cca06g01797 2052 SUPERFAMILY FYVE/PHD zinc finger 270 328 IPR011011 -
Cca06g01797 2052 SUPERFAMILY Clavaminate synthase-like 408 600 - -
Cca06g01797 2052 SMART rnase_8s 1903 2007 IPR006641 GO:0006139
Cca06g01797 2052 SMART cupin_9 418 584 IPR003347 -
Cca06g01797 2052 MobiDBLite consensus disorder prediction 236 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01797 Cca-Chr6 33314496 33360747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01797 333 718 JUMONJI Transcription Factor Family AT4G20400 41.608 8.15e-91 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca06g01797 PLU-1 5.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01797 K11446 - gmx:100789512 3275.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01797 06 33314496 33360747 Cca06g01797 06 33314496 33360747 ECH