Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01796 ATGGATGGGAGAGAGGGTATGGCATTTCCCGGTGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGGGTTAGTGGGTCAGGTCCAGGAACTGGGACTCAGAGTGGAGGGTTCCAACCTCCCTCTGGGTTTAGAGCTTTGTCAAATGTCTCTTCAGGTTCTACATTTTCAGTAGAGCctcaggctcagtctcaggttcaggctcaggctcaggctcagCGTGTTGGTTTTAGCCATGGCATTAACATAGGTTCCTCTCCTGATGGTGGAACTGGAGTATCTTCTTCTGGGGAGCCTGTGAAAAAGAAAAGAGGGAGGCCTCGGAAGTATGGTCCTGAAGGAGCTGTTTCCTTGAGGCTCTCTCCGTTGTCTGCCACTGCTAATTCCACCCCAGGCTTAGGGACTCCTGCTGAGAAACGGCCCCGAGGGCGCCCGCCTGGAAGTGGAAGGAAGCAACAGCTAGCCTCTCTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCTTTTTCACCTCATGTTATCACTGTTGGGGCTTCGGAGGACATCGTAGCAAAGTTATATTCATTTTCACAGCAGAGACCCAGGGCTCTGTGCATCTTAACAGGAACTGGAACAGTTTCTTCTGTCACTCTGCGCCAGCCAGCTTCTACTAGCGTCAGTGTTACTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCTCGCAATAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCAAGTTATTGGTGGTGGTGTTACTAGGCTTATTGCTGCAAGCCCAGTGCAGGTGGTAGTATGCAGTTTTGTATATGGGGGCTCTAAGCCAAAGACTAAACAAGCGACCACTACAAAAGATAGCAGTTCAGAGCCTCAGAGTAGTGACAAGCTAGCTTCACCAGGCAGTGCTCCACCTAATCAAAACTACACCTCTTCTTCTTCTCCTGCCACAGGCATTTGGCCTGCTGCATCAAGGCCAGTAGAGGTGAAAAGTGCACATCCACACACCGGTATTGACTTGACGCGTGGATAA 1074 0.4786 MDGREGMAFPGGSAPYYMQHRGGVSGSGPGTGTQSGGFQPPSGFRALSNVSSGSTFSVEPQAQSQVQAQAQAQRVGFSHGINIGSSPDGGTGVSSSGEPVKKKRGRPRKYGPEGAVSLRLSPLSATANSTPGLGTPAEKRPRGRPPGSGRKQQLASLGEWMNSSAGLAFSPHVITVGASEDIVAKLYSFSQQRPRALCILTGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEEGGPRNRTGGMSVSLSSPDGQVIGGGVTRLIAASPVQVVVCSFVYGGSKPKTKQATTTKDSSSEPQSSDKLASPGSAPPNQNYTSSSSPATGIWPAASRPVEVKSAHPHTGIDLTRG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01796 357 MobiDBLite consensus disorder prediction 290 357 - -
Cca06g01796 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 357 IPR039605 GO:0003680
Cca06g01796 357 MobiDBLite consensus disorder prediction 1 154 - -
Cca06g01796 357 MobiDBLite consensus disorder prediction 290 333 - -
Cca06g01796 357 Gene3D - 171 300 - -
Cca06g01796 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 285 - -
Cca06g01796 357 ProSiteProfiles PPC domain profile profile. 163 304 IPR005175 -
Cca06g01796 357 CDD DUF296 171 283 IPR005175 -
Cca06g01796 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 284 IPR005175 -
Cca06g01796 357 MobiDBLite consensus disorder prediction 26 93 - -
Cca06g01796 357 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01796 Cca-Chr6 33302480 33306813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01796 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.096 5.46e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01796 - - gmx:100790569 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01796 06 33302480 33306813 Cca06g01796 06 33302480 33306813 ECH
Cca06g01796 06 33302480 33306813 Cca09g02424 09 49596444 49599757 PCT