Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01792 atgagcatgcagatgcagatgcagatggagatgATGCAGTGCTGTGGGAACCTTTGGGCTCAGCCACACTATGACTATGGGAGTGTGGAAGTAGCAGAGAAAGAAGGATTAGGATCAGAAGCCAAAGTGGTTTTCAGCGTTTTGGGAATGACGTGTGCTGCCTGCGCTGGATCCGTAGAGAAATCCATCAAACGCTTACCTGGGATTCGAGAGGCCCTTGTTGATGTCTTGAATCATAAAACTCACGTTCTTTACTACCCCAAACTCCTTCATGTAGAGAGGATACGTGAGGCCATTGAAGATGCTGGATTTGAAGCCAAAGCCATAGAAGACGACTCCAACAACATCTCCATTCAATTATGCCGAATACACATACGAGGCATGACTTGTACTTCTTGTTCTTCCGCTATTGAATCAGCTTTGCAATCCCTTCATGGGGTGCATAAAGCACGAGTGGCCTTAACAACTGAAGAAGCAGAAGTTCGCTATGACCCTAACATTCTCACGCACAACCACATAATGGAGGCTATTCAAGACACAGGGTTTGAAGCTATACTCATAAGCACAGGGGAACACATAACCAAGATAGAACTCAAAATTGATGGCATTAAAAATGATCAATCCCTGAATGCCATTGAACACTCTCTCCGTGCACTCCCAGGTGTTGAAACCACAGACATATATCCAGACACTAACAAAATTGTCATAACTTATAAACCATACTTGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCTACAGAGTCAGGGTGTTTTAAAGCGGTGATATTCCCAAATGATGGAGGAAGAGAAGCACAAAGACAAGAGGAAATTAACCGGTACTTCAAGTTGTTCAAATGGAGTTTGGCTTTCACCATTCCGGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACGTGTTTTGGATATCAAAGTTGTAAATATGCTGAACATTGGACTTCTCTTGAGGTGCGAGTTTGCGACCCCGGTGCAGTTTATCATAGGGAGAAGGTTCTATGTTGGTGCATATAAAGCATTTCGCAAAGGTTCTGCTAACATGGATGTGTTGATAGCCTTAGGAACAAATGCAGCCTATTTCTACTCTCTCTATGTTGTGGTAAGGGCTGCTTTCTCTCGGCATTTCAAAGGAAGCGATTTCTTTGAGACCAGTTCTATGCTTATTTCGTTTATTCTATTGGGAAAGTATTTGGAAGTGTTGGCAAAGGGGAAGACATCACAGGCCATTGCAAAGCTTATGGACTTGACGCCCGAGGCAGCAACCTTGTTAACTCATGATGATGAGGGAAATGTGGTTAGTGAAAAACAAATTGATAGCAGGTTGATACAAAAGAATGATGTGATCAAGGTTGTTCCTGGTGCAAAAGTAGCATCGGATGGCTTTGTCATATGGGGTCAAAGTCATGTAAATGAGAGCATGATAACCGGAGAGGCAAGGCCTGTGGGGAAGAGGAAGGGTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGTGTTTTGCATGTTAAGGTGACAAGGGTTGGATCAGAGAGTGCTCTCTCCCAGATTGTTCGACTTGTTGAGTCTGCTCAAATGGCTAAAGCTCCTGTTCAAAAACTTGCAGATCATATTTCTAAATATTTTGTTCCTCTGGTCATTGTGCTTTCTCTTTCGACATGGCTTTCATGGTTTCTCGCTGGAAAGTTACATGCATACCCGAAATCTTGGATACCATCCTCCATGAACAGCTTTGAGCTTGCACTTCAGTTTGGGATTTCGGTTATGGTCATTGCCTGCCCTTGTGCTCTAGGCCTTGCCACTCCTACGGCTGTTATGGTTGGTACTGGAGTTGGTGCAACACAAGGTGTTCTGATCAAAGGGGGGCAAGCATTAGAAAGTGCACACAAGGTGAATTGCATTGTGTTTGATAAGACAGGGACTCTCACAGTTGGGAAGCCAGTGGTTGTAACAACAAAACTCTTCAAAAAAATGTCACTTAAAGATTTTTATGAATTTGCTGCTGCAGCCGAGGTGAACAGTGAGCATCCAATAGCCAAGGCCATTGTCGAGCACGCCAAAAAGATCATAGAAGGTGAAGAAAATCATCCCTGGCCAGAAGCACGCGACTTTGTTTCTATTTCAGGCCATGGAGTGAAGGCCATTGTTCTAAACAAGGAAATAATGGTTGGTAATAAAAAAATGATGTTGGATCATAACATAGCCATTTCAGCAGATGCTGAAGAAATACTAACAGAAGCTGAAAGCCTGGCTCAAACAGTGATTTTAGTATCCTTGGATAAAGAAGTAGCTGGAGTTGTGGCTGTATCTGATCCACTGAAACCTGGTGCCAAAGAAGTTATTTCTATTCTTAATTCCATGAAAATCAAGAGCATCATGGTGACGGGCGATAACTGGGGAACTGCCAACTCCATAGCCAGACAAGCTGGCATGGAAACTGTCATGGCAGAGGCTCAACCCGAGACTAAAGCCACTAAAATAAAAGAATTGCAGGCTTCTGGGTACACTGTGGCAATGGTGGGAGATGGCATAAACGATTCACCAGCACTTGTGGCAGGTGATGTTGGAATGGCAATAGGTGCTGGTACAGACATAGCTATTGAGGCTGCTGACATTGTTCTAATGAAGAGCAATTTGGAGGATATAATAATTGCAATTGACCTTGCAAACAAAACTTTCTCTCGTATTCGTCTAAACTACATTTGGGCTTTGGGTTACAATCTGCTAGCTATCCCAATTGCTGCAGGCATCCTTTACCCTTCCACTAGATTCCGATTGCCACCATGGGTTGCTGGAGCTGCTATGGCTGCCTCTTCTATCAGTGTTGTTTGCTCATCCCTCTTGTTAAAGAATTACAAGAGACCTACCAAGCTAAACAACTTGGAGATAAATGCTATCAAGATTCAATAG 2940 0.4279 MSMQMQMQMEMMQCCGNLWAQPHYDYGSVEVAEKEGLGSEAKVVFSVLGMTCAACAGSVEKSIKRLPGIREALVDVLNHKTHVLYYPKLLHVERIREAIEDAGFEAKAIEDDSNNISIQLCRIHIRGMTCTSCSSAIESALQSLHGVHKARVALTTEEAEVRYDPNILTHNHIMEAIQDTGFEAILISTGEHITKIELKIDGIKNDQSLNAIEHSLRALPGVETTDIYPDTNKIVITYKPYLTGPRTFIEVIESTESGCFKAVIFPNDGGREAQRQEEINRYFKLFKWSLAFTIPVFLTSMVLMYIPGVKRVLDIKVVNMLNIGLLLRCEFATPVQFIIGRRFYVGAYKAFRKGSANMDVLIALGTNAAYFYSLYVVVRAAFSRHFKGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPEAATLLTHDDEGNVVSEKQIDSRLIQKNDVIKVVPGAKVASDGFVIWGQSHVNESMITGEARPVGKRKGDMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWLSWFLAGKLHAYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVTTKLFKKMSLKDFYEFAAAAEVNSEHPIAKAIVEHAKKIIEGEENHPWPEARDFVSISGHGVKAIVLNKEIMVGNKKMMLDHNIAISADAEEILTEAESLAQTVILVSLDKEVAGVVAVSDPLKPGAKEVISILNSMKIKSIMVTGDNWGTANSIARQAGMETVMAEAQPETKATKIKELQASGYTVAMVGDGINDSPALVAGDVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLANKTFSRIRLNYIWALGYNLLAIPIAAGILYPSTRFRLPPWVAGAAMAASSISVVCSSLLLKNYKRPTKLNNLEINAIKIQ 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01792 979 ProSitePatterns E1-E2 ATPases phosphorylation site. 647 653 IPR018303 -
Cca06g01792 979 CDD P-type_ATPase_Cu-like 286 961 - -
Cca06g01792 979 SUPERFAMILY HMA, heavy metal-associated domain 39 112 IPR036163 GO:0046872
Cca06g01792 979 CDD HMA 210 255 IPR006121 GO:0046872
Cca06g01792 979 SFLD C1.7: P-type atpase like 627 901 - -
Cca06g01792 979 SUPERFAMILY HAD-like 644 956 IPR036412 -
Cca06g01792 979 PRINTS P-type cation-transporting ATPase superfamily signature 775 786 - -
Cca06g01792 979 PRINTS P-type cation-transporting ATPase superfamily signature 850 869 - -
Cca06g01792 979 PRINTS P-type cation-transporting ATPase superfamily signature 797 807 - -
Cca06g01792 979 PRINTS P-type cation-transporting ATPase superfamily signature 645 659 - -
Cca06g01792 979 PRINTS P-type cation-transporting ATPase superfamily signature 873 885 - -
Cca06g01792 979 PRINTS P-type cation-transporting ATPase superfamily signature 481 495 - -
Cca06g01792 979 PRINTS Copper-transporting ATPase 1 signature 97 117 - -
Cca06g01792 979 PRINTS Copper-transporting ATPase 1 signature 68 91 - -
Cca06g01792 979 PRINTS Copper-transporting ATPase 1 signature 42 67 - -
Cca06g01792 979 PRINTS Copper-transporting ATPase 1 signature 143 164 - -
Cca06g01792 979 TIGRFAM TIGR00003: copper ion binding protein 42 106 IPR006122 GO:0005507
Cca06g01792 979 TIGRFAM TIGR00003: copper ion binding protein 123 184 IPR006122 GO:0005507
Cca06g01792 979 Gene3D - 119 189 - -
Cca06g01792 979 SUPERFAMILY HMA, heavy metal-associated domain 120 191 IPR036163 GO:0046872
Cca06g01792 979 Gene3D - 612 907 IPR023214 -
Cca06g01792 979 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 398 929 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca06g01792 979 SUPERFAMILY Calcium ATPase, transmembrane domain M 394 637 IPR023298 -
Cca06g01792 979 Pfam Heavy-metal-associated domain 44 105 IPR006121 GO:0046872
Cca06g01792 979 Pfam Heavy-metal-associated domain 123 183 IPR006121 GO:0046872
Cca06g01792 979 ProSitePatterns Heavy-metal-associated domain. 47 76 IPR017969 GO:0046872
Cca06g01792 979 ProSiteProfiles Heavy-metal-associated domain profile. 42 108 IPR006121 GO:0046872
Cca06g01792 979 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 27 970 - -
Cca06g01792 979 SUPERFAMILY HMA, heavy metal-associated domain 190 256 IPR036163 GO:0046872
Cca06g01792 979 CDD HMA 125 184 IPR006121 GO:0046872
Cca06g01792 979 ProSiteProfiles Heavy-metal-associated domain profile. 195 254 IPR006121 GO:0046872
Cca06g01792 979 PANTHER ATP7, ISOFORM B 27 970 - -
Cca06g01792 979 Gene3D - 190 264 - -
Cca06g01792 979 ProSiteProfiles Heavy-metal-associated domain profile. 120 186 IPR006121 GO:0046872
Cca06g01792 979 Pfam haloacid dehalogenase-like hydrolase 641 863 - -
Cca06g01792 979 Gene3D - 731 781 IPR023299 GO:0000166
Cca06g01792 979 Gene3D - 652 730 IPR023299 GO:0000166
Cca06g01792 979 Gene3D - 39 110 - -
Cca06g01792 979 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 358 959 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca06g01792 979 SFLD p-type atpase 627 901 IPR044492 -
Cca06g01792 979 CDD HMA 44 107 IPR006121 GO:0046872
Cca06g01792 979 SUPERFAMILY Calcium ATPase, transduction domain A 445 531 IPR008250 -
Cca06g01792 979 Gene3D - 413 535 - -
Cca06g01792 979 ProSitePatterns Heavy-metal-associated domain. 125 154 IPR017969 GO:0046872
Cca06g01792 979 Pfam E1-E2 ATPase 426 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01792 Cca-Chr6 33270362 33278594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01792 41 979 Primary Pumps ATPases AT1G63440 72.853 0.0 1433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01792 K17686 - gmx:100817431 1662.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01792 06 33270362 33278594 Cca06g01792 06 33270362 33278594 ECH