Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01791 ATGGCGAAGCTGTTAGCCTTAGGTTGCTGGCGAAACCTCTCGCCGCGACCACACTATCCGTCCATGCCCAAATACCCCAAGGCCACCTCCGTCGAGGAGCTCTCCGAGGCCACCGCTCTTTTCTCCGTCGTCGGAATGAGTTGCGCTGCCTGCGCCGGATCCGTCGAGAAGGGCGTGAAGCGCCTCCCGGGGATCCGCGAAGCCATGGTGGACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTCAACGAAGAAATGATCCGCGAGGCCATCGAAAACGCGGGTTTCGAAGCGGCGTTACTGAGCCACGACGACTCCGTTCAAGTGTGCCGCATCCAAATCAAAGGCATGACCTGCACCACCTGCTCCTCCTCCCTCGAATCGGCTCTTCACGCCACTCAAGGCGTCCTCCAGGCCCACGTGGGCCTGGCCACGGAAGAGGCCCAAGTCCAGTACAACCCAAACCTCCTGAGCCACAACCACATTCTCCAAGTCATCCAAGACGCCGGATTCCAACCCACGCTCATCACGTCTAGCGAAGACTTAAGCAAAATAGACCTCCACGTGGAACCCGCCTTAGCCCACCACCCCTCCACCAAACTCATCCAGGATTCCCTGCAGGCACTCCCAGGTGTCCTTGCGGTGGACATCACCCCCGAGTTTAACAAAATTTCCGTTTCTTACAAACCTGACATAACCGGACCCAGAGTTTTCATCAACCTCGTTAACCAAACCGCCAATTTCAAGGCCAAAATATATCCTACACAAGAAGGACAACGAGACTCTCACAGACGCCACGAAACGAGACGTTATTACAAGTCTTTCTTATGGAGCTTGCTCTTTACTATTCCAGTGTTTCTAACCTCCATGGTGTTTATGTATGTCCCTCCAGTTAAGAACTTGCTTGAGGCCAAAATTGTCAACATGCTCACGGTGGGGGAGGTTGCACGGTGGGTGCTGGCCACGCCGGTTCAGTTTGTTCTCGGCTGGCGCTTTTACTACGGTTCGTACAAGGCGCTACGCCGTGGCTCTGCCAACATGGATGTTCTCATTGCGTTGGGAACAAACGCCGCGTATTTCTACTCGGTGTACTCTGTCGTGAGAGCTGCTACTTCTCGAGACTTGGAGGGGAATGATTTCTTTGAGACCAGTGCGATGCTGATTTCGTTCATTCTGCTTGGCAAGTATCTGGAGATTCTGGCCAAGGGGAAGACTTCCGATGCGATTGCCAAGCTCATGAACTTGGCGCCGGACACGGCGGTTTTGCTGAGCGTGGACGCGGATGGGAACGTTGTGGGGGAGGAGGAGATGGATGGGAGGTTGGTGCAGAAGGGTGATGTGATCAAGGTTGTTCCTGGGGCCAAAGTGGCTTCGGATGGGTTTGTTGTGTGGGGGCAGAGTCACGTGAATGAGAGCATGATAACGGGGGAGGCGCGTCCTGTCGCCAAGAGGAAAGGGGATGTTGTTATTGGAGGGACTGTCAATGAGAATGGTGTTTTGCATGTCAAGGCTACCAGGGTGGGATCGGAGAGTGCTCTTTCGCAGATTGTGCGCCTTGTTGAGTCTGCTCAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTCGTGATCGTGATCTCGCTTACTACTTGGCTGGCTTGGTTTTTGGCTGGAAGATTTCATGCTTACCCCAAGTCTTGGATACCGTCTTCCATGGATAGCTTTGAGCTTGCTTTGCAGTTTGGCATATCTGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTGGCGACGCCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTGCTCATCAAAGGAGGGCAAGCGTTAGAAAGTGCACATAAGGTAAATTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCTATGATAGTGAGAACAAATCTATTGACAAAAATGGTGCTCCAAGAATTCTATGAACTTGTGGCTGCAGCTGAGGTTAATAGTGAGCACCCACTGGCTAAGGCCATTGTTGAGTATGCCAAAAGATTTAGAGATGAAGAGAACCCTTCTTGGCCAGAAGCACGGGATTTTGTTTCCATCACAGGACATGGAGTAAAGGCCACTGTTCATAACAAGGAAATAATTGTGGGCAATAAGAGTTTGTTGGCTGATCATAACATTGAAATTCCTGTTGATGCCAAAGATATGCTTGCCGAGGCCGAAAAAATGGCTCAAACAGGAATTTTGGTATCTATAAATGGTAAAGTAGCCGGAGTTTTAGCAGTATCTGATCCATTGAAACCAGGTGCTCAAGAAGTCATTTCCATTCTCAAGTCCATGAAAATCAAGTGCATCATGGTAACTGGGGACAACTTTGGAACTGCTAGTTCTATTGCGAGGCAAGTAGGAATTGAAAGTGTTATTGCTGAGGCCAAACCGGATCAGAAAGCAGAGAAAGTGAAAGAATTGCAGGCTTCTGGGTACACTGTGGCTATGGTGGGAGATGGTATCAATGATTCACCTGCACTTGTAGCAGCAGATGTGGGAATGGCAATAGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATGTTGTCCTCATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGACCTTTCCAGAAAAACATTTTCCCGCATTCGCCTCAATTACTTTTGGGCTCTGGGTTATAACATATTGGGAATCCCAATTGCTGCTGGAGCTCTTTTCCCCTCCACAAGGTTTCGATTGCCACCTTGGATTGCTGGGGCTGCCATGGCTGCCTCCTCTGTCAGCGTCGTTTGCTGTTCTCTGTTGTTGAAATATTACAGGAGACCCAGGAAGCTGGACAACCTTGAGATACGAAGCATAAGGATCGAGTCAGACTGA 2922 0.5048 MAKLLALGCWRNLSPRPHYPSMPKYPKATSVEELSEATALFSVVGMSCAACAGSVEKGVKRLPGIREAMVDVLNNRAHVIFYPSFVNEEMIREAIENAGFEAALLSHDDSVQVCRIQIKGMTCTTCSSSLESALHATQGVLQAHVGLATEEAQVQYNPNLLSHNHILQVIQDAGFQPTLITSSEDLSKIDLHVEPALAHHPSTKLIQDSLQALPGVLAVDITPEFNKISVSYKPDITGPRVFINLVNQTANFKAKIYPTQEGQRDSHRRHETRRYYKSFLWSLLFTIPVFLTSMVFMYVPPVKNLLEAKIVNMLTVGEVARWVLATPVQFVLGWRFYYGSYKALRRGSANMDVLIALGTNAAYFYSVYSVVRAATSRDLEGNDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLAPDTAVLLSVDADGNVVGEEEMDGRLVQKGDVIKVVPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDVVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVIVISLTTWLAWFLAGRFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPMIVRTNLLTKMVLQEFYELVAAAEVNSEHPLAKAIVEYAKRFRDEENPSWPEARDFVSITGHGVKATVHNKEIIVGNKSLLADHNIEIPVDAKDMLAEAEKMAQTGILVSINGKVAGVLAVSDPLKPGAQEVISILKSMKIKCIMVTGDNFGTASSIARQVGIESVIAEAKPDQKAEKVKELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADVVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNILGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPRKLDNLEIRSIRIESD 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01791 973 SUPERFAMILY Calcium ATPase, transmembrane domain M 386 921 IPR023298 -
Cca06g01791 973 ProSitePatterns E1-E2 ATPases phosphorylation site. 640 646 IPR018303 -
Cca06g01791 973 CDD HMA 41 103 IPR006121 GO:0046872
Cca06g01791 973 ProSitePatterns Heavy-metal-associated domain. 43 72 IPR017969 GO:0046872
Cca06g01791 973 CDD HMA 116 178 IPR006121 GO:0046872
Cca06g01791 973 PRINTS Copper-transporting ATPase 1 signature 38 63 - -
Cca06g01791 973 PRINTS Copper-transporting ATPase 1 signature 64 87 - -
Cca06g01791 973 PRINTS Copper-transporting ATPase 1 signature 93 113 - -
Cca06g01791 973 PRINTS Copper-transporting ATPase 1 signature 136 157 - -
Cca06g01791 973 Pfam E1-E2 ATPase 422 616 - -
Cca06g01791 973 Gene3D - 605 899 IPR023214 -
Cca06g01791 973 ProSiteProfiles Heavy-metal-associated domain profile. 113 179 IPR006121 GO:0046872
Cca06g01791 973 SFLD p-type atpase 620 894 IPR044492 -
Cca06g01791 973 TIGRFAM TIGR00003: copper ion binding protein 116 176 IPR006122 GO:0005507
Cca06g01791 973 TIGRFAM TIGR00003: copper ion binding protein 41 102 IPR006122 GO:0005507
Cca06g01791 973 SUPERFAMILY HMA, heavy metal-associated domain 107 182 IPR036163 GO:0046872
Cca06g01791 973 Gene3D - 112 182 - -
Cca06g01791 973 Gene3D - 406 528 - -
Cca06g01791 973 SFLD C1.7: P-type atpase like 620 894 - -
Cca06g01791 973 PRINTS P-type cation-transporting ATPase superfamily signature 474 488 - -
Cca06g01791 973 PRINTS P-type cation-transporting ATPase superfamily signature 638 652 - -
Cca06g01791 973 PRINTS P-type cation-transporting ATPase superfamily signature 767 778 - -
Cca06g01791 973 PRINTS P-type cation-transporting ATPase superfamily signature 789 799 - -
Cca06g01791 973 PRINTS P-type cation-transporting ATPase superfamily signature 842 861 - -
Cca06g01791 973 PRINTS P-type cation-transporting ATPase superfamily signature 865 877 - -
Cca06g01791 973 Gene3D - 32 104 - -
Cca06g01791 973 SUPERFAMILY HMA, heavy metal-associated domain 37 108 IPR036163 GO:0046872
Cca06g01791 973 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 391 924 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca06g01791 973 CDD P-type_ATPase_Cu-like 277 952 - -
Cca06g01791 973 SUPERFAMILY HAD-like 637 948 IPR036412 -
Cca06g01791 973 Gene3D - 723 773 IPR023299 GO:0000166
Cca06g01791 973 Gene3D - 645 722 IPR023299 GO:0000166
Cca06g01791 973 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 351 951 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca06g01791 973 ProSitePatterns Heavy-metal-associated domain. 118 147 IPR017969 GO:0046872
Cca06g01791 973 Pfam Heavy-metal-associated domain 41 101 IPR006121 GO:0046872
Cca06g01791 973 Pfam Heavy-metal-associated domain 116 175 IPR006121 GO:0046872
Cca06g01791 973 PANTHER ATP7, ISOFORM B 12 962 - -
Cca06g01791 973 Pfam haloacid dehalogenase-like hydrolase 634 856 - -
Cca06g01791 973 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 12 962 - -
Cca06g01791 973 SUPERFAMILY Calcium ATPase, transduction domain A 440 524 IPR008250 -
Cca06g01791 973 ProSiteProfiles Heavy-metal-associated domain profile. 38 104 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01791 Cca-Chr6 33260604 33265018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01791 3 971 Primary Pumps ATPases AT1G63440 72.149 0.0 1471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01791 K17686 - gmx:100816893 1653.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01791 06 33260604 33265018 Cca06g01791 06 33260604 33265018 ECH
Cca06g01791 06 33260604 33265018 Cca09g02419 09 49564630 49570895 PCT