Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01789 ATGTGTGGAAAACTCAGAAGAAAGATGAAGCCTTGTACTTCATTGTTGTTTCTCAGTTTGATTTCCACGCTCTCTTTTGTGGCTTCTGACATCGTGCCCCCAAACGAAGTTTGGGCGCTCAGGAGTTTCAAAGAAGCTGTTTATGAAGACCCATATCAAGTATTATCGAATTGGGATACGTTGGAATCAGATCCTTGTAACTGTTTTGGCGTCTTATGCACTTTGGCTCGAGATCACGTCATCAAGCTAAGCGTACCAGGATCATCATTAAAAGGGTTTCTTGCACCAGAGTTGGGGCAAATCACCTACTTGCAAGAACTAAATTTGCATGACAACAATTTCATTGGAACAATACCTAGAGAATTGGGTGTGTTGAAATCTCTCAAGGTGTTGGATTTGGGAAGGAATCAGTTAACGGGACCAATTCCTCCGGAGATTGGAAATCTAACCCAAGTTGTGAACATAAACTTGCAGTCCAACGGGTTGACTGGTAGGCTACCTCCAGAGCTTGGTAACTTGAGATACCTTCAAGAACTTCGGCTGGATAGGAATAGGCTTCAAGGACCTGTTCCTGCTGGTGGTAGCTCAAATATTGCTTCAAATAGGCATAGCATGTATGCATCAAAGGAGAATGTAACTGGCTTGTGTCGTTCGTCTCAGTTGAAAGTAGCAGATTTCTCATATAATTTTTTAGTTGGTAGCATACCCAAATGCTTGGAGTATCTTCCAAGGTTAAGCTTTCAAGGTAACTGCCTCCAGAGCAATGATTTAAATCAGCGGCCTTCTATTCAGTGTGCGGGTGCTTCACCTGCCAAGAGCCAGCCAGTGGTGAACCCATACCACCAAACTACTGAATATGTGACCAACCATCATGGAGCATCAAAACCTATTTGGCTTTTGGCTCTAGAAATAGTAACTGGAACTATGGTGGGCTCTCTCTTTCTGGTTGCTGTTCTTGCAGCTTTTCAGAGATGTAACAAAAGATCATCTATCATCATTCCTTGGAAAAAATCTTCAAGCCAGAAAGATCATATGGCAGCAGTATATATAGACCCTGAGATGTTGAAGGATGTGAGAAGGTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTCTACAAGGGAACCATGAAAGGTGGACCGGAGATTGCTGTTATTTCCCTCTGCATCAAGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTCCAGAGAGAAGTGGCAGACTTGGCAAGATTAAATCAAGAGAATATAGGAAAACTACTGGGCTATTGTAGAGAGGACACTCCATTTACAAGGATGTTGGTTTTTGATTATGCATCAAATGGGACACTTCATGAACACCTACACTGTTATGAAGAAGGGTGCCAGTTTTCTTGGACACGGCGTATGAAAATTGCCATAGGCATTGCACGCGGACTCAAGTATTTGCACACAGAAGTGGACCCTCCATTTACTATCTCGGAGCTTAATTCCAGTGCTGTATACCTTACTGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAAACAATTCTTGAACGATCAGAAAAGAATTCTGGTTCTATTGGTAGCCAAGGTGCTATATGTGTTCTTCCAAACTCCCTTGAAGCACGCCATCTTGATACCAAAGGGAACATATATGCTTTTGGGGTACTTCTGCTAGAGATAATTAGTGGGAGACCTCCATACTGTAAGAACAAGGGGTACTTGGTGGATTGGGCCAAGGGCTACCTTGAAAGGCCTGATGAAATGTCCCACGTGGTGGATCCTGAACTAAAACATTTTAGATATGAAGACCTCAAAGTGATATGCGAGGTAATAACTCTTTGTATCGACCCTGATACAACTATGCGTCCATCTATGCGAGAATTATGCAGCATGCTGGAGAGCAGAATTGATACATCAGTAAGCTTGGAGATCAAGTCATCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCTTAA 2013 0.4267 MCGKLRRKMKPCTSLLFLSLISTLSFVASDIVPPNEVWALRSFKEAVYEDPYQVLSNWDTLESDPCNCFGVLCTLARDHVIKLSVPGSSLKGFLAPELGQITYLQELNLHDNNFIGTIPRELGVLKSLKVLDLGRNQLTGPIPPEIGNLTQVVNINLQSNGLTGRLPPELGNLRYLQELRLDRNRLQGPVPAGGSSNIASNRHSMYASKENVTGLCRSSQLKVADFSYNFLVGSIPKCLEYLPRLSFQGNCLQSNDLNQRPSIQCAGASPAKSQPVVNPYHQTTEYVTNHHGASKPIWLLALEIVTGTMVGSLFLVAVLAAFQRCNKRSSIIIPWKKSSSQKDHMAAVYIDPEMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVADLARLNQENIGKLLGYCREDTPFTRMLVFDYASNGTLHEHLHCYEEGCQFSWTRRMKIAIGIARGLKYLHTEVDPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGSIGSQGAICVLPNSLEARHLDTKGNIYAFGVLLLEIISGRPPYCKNKGYLVDWAKGYLERPDEMSHVVDPELKHFRYEDLKVICEVITLCIDPDTTMRPSMRELCSMLESRIDTSVSLEIKSSSLAWAELALLS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01789 670 ProSiteProfiles Protein kinase domain profile. 371 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01789 670 SUPERFAMILY L domain-like 33 246 - -
Cca06g01789 670 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Cca06g01789 670 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Cca06g01789 670 SUPERFAMILY Protein kinase-like (PK-like) 351 645 IPR011009 -
Cca06g01789 670 Pfam Protein tyrosine and serine/threonine kinase 375 644 IPR001245 GO:0004672|GO:0006468
Cca06g01789 670 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 668 - -
Cca06g01789 670 Gene3D Transferase(Phosphotransferase) domain 1 453 660 - -
Cca06g01789 670 Gene3D Ribonuclease Inhibitor 149 272 IPR032675 -
Cca06g01789 670 PANTHER PROTEIN MALE DISCOVERER 2 14 668 - -
Cca06g01789 670 Gene3D Phosphorylase Kinase; domain 1 345 452 - -
Cca06g01789 670 Gene3D Ribonuclease Inhibitor 36 148 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01789 Cca-Chr6 33251013 33256010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01789 49 649 Receptor kinase-like Gene Family AT5G45780 27.941 4.71e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Cca06g01789 PK_Tyr_Ser-Thr 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01789 - - gmx:100794714 1189.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01789 06 33251013 33256010 Cca06g01789 06 33251013 33256010 ECH
Cca06g01789 06 33251013 33256010 Cca09g02415 09 49528963 49533863 PCT